Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2322 ATGAAGAGAcagagagaaaatgaaggaaCAACATTAGAAAGCTGGGACTGTTTAATCGTGCCCGATACAAGTGTGTCCACATCCCCTGAAGTATACGAGTGCAAAACGTGCAACCGCAAGTTCTCCTCATTTCAAGCACTGGGTGGCCACAGGGCTAGTCACAAGAGGGCGAAGCTGGAAGGGGAACAACCCGGAGCAGGGGCAAAATCTCTGGGCCTGGGAATTCGGAGTGAGCCCAAAATGCACGAGTGCTCCATTTGTGGTCATGGATTCTCTCTGGGCCAGGCCCTGGGAGGACACATGAGAAGGCACAGAACTGAAACCAACGAAGCGTTTTCTTCCATAAACCACGTCGTTGCAAAAGTTTCGGTCCTAAAGCGATCGTGTAACGACAAGGTTTTCCGCTTGGACCTCAACTTAACTCCTCTCGAGAATGACTTGAAGTTATTGTTGTTCGGGAAAGTGTCACCTAAAGTTCATCCTTCTTCCTTCtga 495 0.4747 MKRQRENEGTTLESWDCLIVPDTSVSTSPEVYECKTCNRKFSSFQALGGHRASHKRAKLEGEQPGAGAKSLGLGIRSEPKMHECSICGHGFSLGQALGGHMRRHRTETNEAFSSINHVVAKVSVLKRSCNDKVFRLDLNLTPLENDLKLLLFGKVSPKVHPSSF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2322 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Ssu7g2322 164 SUPERFAMILY beta-beta-alpha zinc fingers 31 104 IPR036236 -
Ssu7g2322 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Ssu7g2322 164 SMART c2h2final6 32 54 IPR013087 -
Ssu7g2322 164 SMART c2h2final6 82 104 IPR013087 -
Ssu7g2322 164 Gene3D Classic Zinc Finger 66 133 - -
Ssu7g2322 164 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 24 158 - -
Ssu7g2322 164 Gene3D Classic Zinc Finger 28 57 - -
Ssu7g2322 164 PANTHER ZINC FINGER PROTEIN ZAT5 24 158 - -
Ssu7g2322 164 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Ssu7g2322 164 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Ssu7g2322 164 Pfam C2H2-type zinc finger 82 106 - -
Ssu7g2322 164 Pfam C2H2-type zinc finger 31 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2322 Ssu-Chr7 45555227 45555721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2322 1 159 C2H2 Transcription Factor Family AT2G37430 44.571 1.74e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2322 zf-C2H2_6 9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2322 - - gmx:100793782 249.21