Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2321 ATGAAGAGACAGAGAGATGAAGTAGAGAGCATAGGTTTGGCAAATTGTCTAATGCTGCTGTCTCATCCCAGAGAAAGCAAACCCCAGAAACCTTTGGGCCCTGTAGAATTTGAGTGCAGGACGTGCAAGCGCAAGTTCTCTTCGTTTCAAGCCCTCGGTGGCCACCGGGCCAGCCACAAGAAGCCCAAACTAGACGTGAAAGAACAGGGCAAATTTCTTAGGTTGGGGAACAAGCCCAAAAAGCACGAGTGCTCCATTTGTGGTCAGGAATTCCCTTTGGGCCAGGCATTGGGAGGACACATGAAACGGCACAGAATTGCCGCCAACGAAGGGTTTTCTTCAATAGAccaggttgttgtaaacgtccCAGTTCTGAAAAGATCGAATAGTACGAGGGTTACGTGCTTGGACTTGAACTTGACTCCTCTGCCAGAATGA 438 0.468 MKRQRDEVESIGLANCLMLLSHPRESKPQKPLGPVEFECRTCKRKFSSFQALGGHRASHKKPKLDVKEQGKFLRLGNKPKKHECSICGQEFPLGQALGGHMKRHRIAANEGFSSIDQVVVNVPVLKRSNSTRVTCLDLNLTPLPE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2321 145 PANTHER ZINC FINGER PROTEIN ZAT5 1 140 - -
Ssu7g2321 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Ssu7g2321 145 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 140 - -
Ssu7g2321 145 SUPERFAMILY beta-beta-alpha zinc fingers 37 104 IPR036236 -
Ssu7g2321 145 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Ssu7g2321 145 SMART c2h2final6 82 104 IPR013087 -
Ssu7g2321 145 SMART c2h2final6 37 59 IPR013087 -
Ssu7g2321 145 Pfam C2H2-type zinc finger 82 106 - -
Ssu7g2321 145 Pfam C2H2-type zinc finger 37 62 - -
Ssu7g2321 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Ssu7g2321 145 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Ssu7g2321 145 Gene3D Classic Zinc Finger 34 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2321 Ssu-Chr7 45549891 45550328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2321 1 143 C2H2 Transcription Factor Family AT2G37430 49.045 1.02e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2321 zf-C2H2_6 2.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2321 - - gmx:100795828 229.18