Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2311 ATGGGAGAAGAAGTGGTTTGTGTGCATGCAtcagaagaagaaaggaaggaaaacaATGAGGAATCAAGGACAGAACTGAAGCGTGACTACCGCCAATGCGTTACTGATACTGAACCTCACCTGTCTCCAAATAAGAAACAAGCAAAAGAAGTTTCAAACGATGAAGTGCGCTCTGAGGTTTCCAACCCCAACGTTTCTGCAGCAGAGCATGCGCAAACTTTTCAAGATATCAGTAGCCAACCGACTGAATCTGCGAATGTTAGCCACGCAGAGTGTGGGGAACTAACGTCTACTTGTTTGGAGAATTCATGTTCTGATGAGACCTTGAGTGATGAAGCCGGTGATcagaataataacaataatacttCTCAGAGTGATAAGGACACGAGTAGTGCTGTAATGACTTCCTGTGTTGTGATGGAAATCCCCAAGCATGCTAGTTCATCTGGGATCAGGAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGGTTTACTACCACCTGCTTCTGTGCACCGTCCTGCTCTATATACTGATGGCCATCGCATTGGCTTTCATGGGGATGATGAAGAATATTTGGCAAGGGATGATTGTAATGGTGGGTTGTTAGAAAGCCCGTGTGGAATGGTATATGCTCATGATGGAGATTTGGATTTGTTCACTCGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTCCCCAACTGCTACCCTACAAATGTCAAAAAGCTGTTATCAACTGGCATCCTTGACGGAGCTATAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTTCAGGGGATTATTGATGGAGGTGGATATTTGTGTGGCTGTTTGATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTTGAGCAGCATGCTGGAGCCAAGACTAGACATCcaaataatcatatattctTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACTGCTCCGCTCAGTATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAGGTTTGGAAAGAAAGTCTTCTACAAAGCAATGGCAGGGTTCAGGCTTATAAAAATTATGGCTCCAAGCTTGTTGGCATACCTCATACAAACATAAGTCAATCTGTAGAAAGTACAAGCCACTTGTCGTCTTTGCATGCACTGAGTcattatgagcagcaaatgtaTATGAATCAGACAAATGACGAGTGGAAACGTGTGGTGAAAAAGCCAAGCTCCTACACTTCTAACTCAGGTGTACTGCTGAAGAGAAGTGCTGATGGTTGCACTAAGAGAAgGGACAACGATTTACACAGGTTACTTTTTATGCCTAATGGACTACCAGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAgAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGCTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGATATAGCGCTCTCATTGGCAAATGGTCAAAACCTTACCACGGGGGACAGTGATGATATGTGTGCAGTATGCGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTAGAGATAATGCTGTTAATGGGAGAGAATCTTCTATTGTGAGGCCAATCATGATACGGTTGACACGGGTTGATAAGACACCAGAATTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAGCGAACAGTAATAATTTGTGACCAGTGTGAGAAAGAGTATCATGTTGGCTGCTTGCGGGACATTGGACTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCTGACATTATACCTGCTTCCTTGTCAGAACTAATAATAAGGAAGCATGAGGAGAAAGGATTATGTACCTATGGGGTCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCATTGCTTTCACGAGCTGCTGCAATTTTCAGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGATCTGATTCCTGTTATGGTCTACGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTGGTCGCTACAAGCAGAGCACATCAAGGAAAAGGTTTTTTTCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTATCTTCTCTAAATGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGATGCTGAGTCAATTTGGACCAAGAAATTGGGCTTCCAAAAGATGAGCGAAGATCAGttATCCAAATATCTCAGAGAGGTGCAGCTAACCCTCTTTAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCTGGCCATAGAATGA 2661 0.4107 MGEEVVCVHASEEERKENNEESRTELKRDYRQCVTDTEPHLSPNKKQAKEVSNDEVRSEVSNPNVSAAEHAQTFQDISSQPTESANVSHAECGELTSTCLENSCSDETLSDEAGDQNNNNNTSQSDKDTSSAVMTSCVVMEIPKHASSSGIRKITFKFSKKKEDYGLLPPASVHRPALYTDGHRIGFHGDDEEYLARDDCNGGLLESPCGMVYAHDGDLDLFTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAIVKYIYNPGKVELQGIIDGGGYLCGCLMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQVWKESLLQSNGRVQAYKNYGSKLVGIPHTNISQSVESTSHLSSLHALSHYEQQMYMNQTNDEWKRVVKKPSSYTSNSGVLLKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCACCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCRDNAVNGRESSIVRPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADIIPASLSELIIRKHEEKGLCTYGVMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRAHQGKGFFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFQKMSEDQLSKYLREVQLTLFNKTSMLEKTVQLAIE 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2311 886 MobiDBLite consensus disorder prediction 1 35 - -
Ssu7g2311 886 Coils Coil 9 29 - -
Ssu7g2311 886 MobiDBLite consensus disorder prediction 1 89 - -
Ssu7g2311 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 673 IPR013083 -
Ssu7g2311 886 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 2 882 - -
Ssu7g2311 886 ProSiteProfiles Zinc finger PHD-type profile. 539 584 IPR019787 -
Ssu7g2311 886 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 765 856 IPR016181 -
Ssu7g2311 886 SMART PHD_3 541 582 IPR001965 -
Ssu7g2311 886 SMART PHD_3 614 671 IPR001965 -
Ssu7g2311 886 CDD PHD1_AIRE 541 581 - -
Ssu7g2311 886 MobiDBLite consensus disorder prediction 57 89 - -
Ssu7g2311 886 SUPERFAMILY FYVE/PHD zinc finger 612 668 IPR011011 -
Ssu7g2311 886 Pfam Tify domain binding domain 270 324 IPR032308 -
Ssu7g2311 886 Pfam Tify domain binding domain 475 524 IPR032308 -
Ssu7g2311 886 Gene3D - 712 880 - -
Ssu7g2311 886 ProSitePatterns Zinc finger PHD-type signature. 542 581 IPR019786 -
Ssu7g2311 886 SUPERFAMILY FYVE/PHD zinc finger 537 586 IPR011011 -
Ssu7g2311 886 ProSitePatterns Zinc finger PHD-type signature. 615 670 IPR019786 -
Ssu7g2311 886 MobiDBLite consensus disorder prediction 107 131 - -
Ssu7g2311 886 PANTHER AUTOIMMUNE REGULATOR 2 882 - -
Ssu7g2311 886 Pfam PHD-finger 541 582 IPR019787 -
Ssu7g2311 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 609 IPR013083 -
Ssu7g2311 886 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2311 Ssu-Chr7 45347864 45357132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2311 1 881 PHD Transcription Factor Family AT3G53680 52.790 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu7g2311 TDBD 8.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2311 - - gmx:100808999 1650.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2311 7 45347864 45357132 Ssu7g2311 7 45347864 45357132 ECH