Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2305 ATGGCGGCGTCGCGGCGGCTCCGGGACCTCCAATCGCAACCGGCGAACAAGATCTGCGTGGACTGCTCCCAGAAGAACCCGCAGTGGGCCTCCGTCTCGTACGGCGTGTTCATGTGCCTGGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACTCCTGGTCCGAAATCCAAGTCAAGAAAATGGAGGCCGGCGGCAACGACAAACTCAACGCCTTCCTCGCCCAGTACTCCATCCCCAAGGACACCGACATCGTCACCAAGTACAACACCAACGCCGCCGCCGTCTACCGCGACCGGATCCAGGCCATCGCCGAGGGCCGCCCCTGGCGCGATCCGCCCGTCGTCAAGGAGAACCTCGCCGCCGCCGGCAGGGGGAAGCCGCCGCTGACGACGCAGGCGAGGAAGAGCGGCGATGGAGGATGGGACGATTGGGATAACGACGGGAGTTCGGGAGACTCCCGGAGCAAGTCGACCGGGGACTTTAGGAGTCTCAACGGCGGCGCCGCGCCGGTGAGGTCGAGGTCGACGGAGGACATCTACACGCGGTCGCAGCTGGAGGCGTCGGCGGCGAACAAGGGGAGCTTCTTCGCGAGGAAGATGGCGGAGAACGAGTCGCGGCCGGAGGGGCTTCCGCCGTCGCAGGGAGGGAAGTACGTGGGGTTCGGGTCCAGTCCGCCGCCTCCGCTGAGGAACGAGTCGCAAAACGATTATTTCTCTGTCGTTTCGCAGGGGATTGGGAAATTGTCTTTGGTTGCAGCCTCTGCTGCTAATGTTGTTCAGGCTGGCACGAAAGAGATCACTTCTAAGGTCAAGGAAGGTGGTTACGATCATAAGGTCAATGAAACTGTCAATGTTGTCACTCAAAAGACATCAGAGATTGGACAGAGGACTTGGGGCATAATGAAAGGAGTCATGGCTATGGCTTCCCAGAAGATCGAGGAGTACACTAGAGATGATCCAAACTGGAAGACTGATAACTGGCAACAAAATGAGAATGATAGAAATGGTTATTATCAGGATTTTAATCAAGAGAACAAAGGCCGGAATTCTTCTACTGGAAGAGAACAAACTTCATCAGGGCAATATAAAAGTCATAGCTCAAGCTCTTGGGATGATTGGGACCACAAAGATAGCAGGAAGGAAGAACCACCTAAAGGATCAACTCCTCATTCGTCAGGTGGGCAGTCGAGTACCTACAATTCAAGCTCTTGGGATGATTGGGAGCAGAGAGATTCTAGGAAGGAAGAACCAGCTAAAAGATCAGCTCCCCATAATAATGATCATTGGGCTGGCTGGGATAATGCCAAAGATGAtggatttgataatttttatgaagGTGCATCTAATAAGAAAGGTGTTGGTCATAATGGGAAATCAGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1443 0.5447 MAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQVKKMEAGGNDKLNAFLAQYSIPKDTDIVTKYNTNAAAVYRDRIQAIAEGRPWRDPPVVKENLAAAGRGKPPLTTQARKSGDGGWDDWDNDGSSGDSRSKSTGDFRSLNGGAAPVRSRSTEDIYTRSQLEASAANKGSFFARKMAENESRPEGLPPSQGGKYVGFGSSPPPPLRNESQNDYFSVVSQGIGKLSLVAASAANVVQAGTKEITSKVKEGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMAMASQKIEEYTRDDPNWKTDNWQQNENDRNGYYQDFNQENKGRNSSTGREQTSSGQYKSHSSSSWDDWDHKDSRKEEPPKGSTPHSSGGQSSTYNSSSWDDWEQRDSRKEEPAKRSAPHNNDHWAGWDNAKDDGFDNFYEGASNKKGVGHNGKSDGTWTEGGFL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2305 480 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Ssu7g2305 480 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Ssu7g2305 480 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Ssu7g2305 480 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Ssu7g2305 480 CDD ArfGap_ArfGap1 3 117 - -
Ssu7g2305 480 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Ssu7g2305 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 403 - -
Ssu7g2305 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 399 480 - -
Ssu7g2305 480 MobiDBLite consensus disorder prediction 333 378 - -
Ssu7g2305 480 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Ssu7g2305 480 SUPERFAMILY ArfGap/RecO-like zinc finger 5 115 IPR037278 -
Ssu7g2305 480 MobiDBLite consensus disorder prediction 399 416 - -
Ssu7g2305 480 MobiDBLite consensus disorder prediction 379 397 - -
Ssu7g2305 480 MobiDBLite consensus disorder prediction 130 190 - -
Ssu7g2305 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 403 IPR044519 GO:0005096|GO:0016192
Ssu7g2305 480 MobiDBLite consensus disorder prediction 441 455 - -
Ssu7g2305 480 MobiDBLite consensus disorder prediction 327 480 - -
Ssu7g2305 480 MobiDBLite consensus disorder prediction 212 243 - -
Ssu7g2305 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 399 480 IPR044519 GO:0005096|GO:0016192
Ssu7g2305 480 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Ssu7g2305 480 MobiDBLite consensus disorder prediction 417 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2305 Ssu-Chr7 45270602 45274705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2305 5 87 C2H2 Transcription Factor Family AT4G05330 51.190 4.84e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2305 K12492 - gmx:100806519 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1129 4 17935300 17939515 Ssu7g2305 7 45270602 45274705 PCT