Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2302 ATGATTCAGGTCAACTACAAGGGTGAAGAGAAGCAGTTTGCTGCCGAAGAAATCTCTTCTATGGTGCTTATGAAAATGCGTGAGATTGCTGAAGCGTATCTTGGCTCTACAGTCAAGAATGCTGTTGTTACTGTCCCTGCTTACTTTAATGATTCTCAGCGTCAAGCTACCAAAGATGCTGGTGTTATTGCTGGTCTTAATGTCATGCGAATTATTAATGAGCCTACTGCTGCGGCCATTGCTTATGGTCTTGACAAGAAGGCTACCAGTGTCGGCGAGAAAAATGTCTTGATTTTTGATCTTGGTGGTGGTACTTTTGATGTCTCATTACTTACTATTGAAGAGGGTATCTTTGAGGTGAAAGCCACAGCTGGGGACACCCATCTTGGAGGTGAGGATTTTGATAACAGGATGGTGAACCACTTTGTTCAGGAATTTAAGAGAAAGAACAAGAAGGATATTAGTGGCAACCCCAGAGCACTTAGGAGGTTGAGGACTGCTTGTGAGAGGGCTAAGAGAACTCTATCTTCCACTGCCCAAACCACCATTGAAATTGATTCTCTGTACGAGGGAATTGATTTCTACTCCCCCATTACCCGTGCTAGATTTGAGGAGCTCAATATGGATCTCTTCCGCAAGTGCATGGAACCAGTTGAGAAGTGCTTAAGAGATGCTAAGATGGACAAGAGGTCTGTGCATGATGTTGTGCTTGTTGGTGGTTCCACCAGAATTCCCAAGGTTCAACAACTTCTGCAGGATTTCTTTAATGGGAAGGAGCTCTGCAAGAGCATCAATCCAGATGAGGCTGTGGCATATGGTGCAGCTGTTCAAGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAGGATCTTCTCCTGCTTGATGTCACCCCACTGTCTCTTGGGTTGGAAACTGCTGGTGGGGTGATGACAGTCCTGATCCCCAGGAACACTACAATCCCAACAAAGAAAGAACAAGTTTTCTCAACCTATTCTGACAACCAGCCTGGTGTGTTGATCCAGGTTTATGAAGGAGAGAGAACAAGGACTAGAGATAACAATTTGCTGGGCAAATTTGAACTCTCAGGCATTCCTCCTGCACCCAGGGGTGTTCCTCAGATTACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTCTCTGCCGAAGACAAAACTACCGGCCAAAAGAATAAGATCACCATTACCAACGACAAGGGTAGATTGTCAAAGGAAGAGATTGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAATCTGAAGATGAAGAGCATAAGAAGAAGGTAGAGGCCAAGAATGCATTGGAGAACTATGCATACAACATGAGGAATACCGTGAAGGATGAGAAGATTGCAGGAAAACTTGATCCAGCTGACAAGAAAAAGATTGAGGATGCCATTGAGCAGACCATCCAGTGGCTAGACAGCAATCAGCTTGGAGAGGCAGATGAGTTTGAGGACAAAATGAAGGAATTGGAAAGCATCTGCAACCCAATCATCGCCAAGATGTACCAGGGTGGCGCTGGTCCAGACATGGGAGGTGCAATGGACGATGATGTTCCTGCTGGTGGAAGTGGTGCTGGTCCAAAGATTGAGGAAGTAGACTAA 1632 0.4522 MIQVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIAGKLDPADKKKIEDAIEQTIQWLDSNQLGEADEFEDKMKELESICNPIIAKMYQGGAGPDMGGAMDDDVPAGGSGAGPKIEEVD 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2302 543 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 438 519 IPR029048 -
Ssu7g2302 543 ProSitePatterns Heat shock hsp70 proteins family signature 3. 235 249 IPR018181 -
Ssu7g2302 543 ProSitePatterns Heat shock hsp70 proteins family signature 2. 98 111 IPR018181 -
Ssu7g2302 543 Gene3D - 1 21 - -
Ssu7g2302 543 Gene3D - 87 261 - -
Ssu7g2302 543 SUPERFAMILY Actin-like ATPase domain 2 86 IPR043129 -
Ssu7g2302 543 Pfam Hsp70 protein 1 513 IPR013126 GO:0005524|GO:0140662
Ssu7g2302 543 Gene3D Actin; Chain A, domain 4 130 213 - -
Ssu7g2302 543 PRINTS 70kDa heat shock protein signature 232 248 - -
Ssu7g2302 543 PRINTS 70kDa heat shock protein signature 41 61 - -
Ssu7g2302 543 PRINTS 70kDa heat shock protein signature 264 284 - -
Ssu7g2302 543 PRINTS 70kDa heat shock protein signature 291 310 - -
Ssu7g2302 543 PRINTS 70kDa heat shock protein signature 372 388 - -
Ssu7g2302 543 PRINTS 70kDa heat shock protein signature 104 114 - -
Ssu7g2302 543 SUPERFAMILY Actin-like ATPase domain 93 283 IPR043129 -
Ssu7g2302 543 PANTHER HEAT SHOCK PROTEIN 70KDA 1 523 IPR013126 GO:0005524|GO:0140662
Ssu7g2302 543 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 286 439 IPR029047 -
Ssu7g2302 543 Gene3D - 440 514 IPR029048 -
Ssu7g2302 543 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 523 - -
Ssu7g2302 543 MobiDBLite consensus disorder prediction 515 543 - -
Ssu7g2302 543 Gene3D - 22 279 - -
Ssu7g2302 543 Coils Coil 416 436 - -
Ssu7g2302 543 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 287 444 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2302 Ssu-Chr7 45188629 45190260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2302 1 543 Calmodulin-binding Proteins AT3G12580 93.223 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2302 K03283 - gmx:100804917 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2302 7 45188629 45190260 Ssu7g2302 7 45188629 45190260 ECH
Ssu7g2302 7 45188629 45190260 Ssu3g2620 3 79729850 79731073 ECH