Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2295 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGACGACGACGAAGAATACCCAATCCCTCTCTCGAAAAAACCCTCCACGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCACAGCCAAAACCAACGACCGTTCAGAAAACCGCCGCCGCCGGCGGACACCAACGGCGGCGACGGCGTCATTCCGGCGAGGGAGATTCGATCCTCCGAAGCAGAAAACTACGGTAACCAACACCTCTTGATGCAAGAAGAGGAAATGGCTTCGTGGCTCCACTATCCAATCCACGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGCGCCGACATCCTCTACCAGCCGCAAAACGCCAGCGCGAGCCAGAATCACAGCAGCGCCGCCGTGCAAGCCTCCGTTCGCACGGCGGAGCTCCGGCATCCGGCTCATCGGCCTCCGATTCCGCTGCCGAGGCGGTCGGAGCAGGCGCCGAGCAGAGTACACAATTTCGCGCACTTCTCGAAGCACGGCAATGCGTCGTCGAGTTCGAAGGCCGCGGCCGCGCAGCCGACGGTGGTGGATTCTTGCGACACGCCGGCCACGACGGCGGAGCGCGCGGAAACTGGTCGTGTGAGCGTGAGCGCCGCCGCCGCCAAGACGGAGGCGGCGAGCGGCGGAAGGGAGACGGCGACTTGCGACGTGACGGTGAGGTCGTCGCCGAGCGGTTCAAGCGGGAGCGCCGAACCGGATCAGGGGGAACCGGTGGCGGACCAGAAGAGGAAGGGAAGGGAACCGGAAGAATCGGAGTTTCAGAGCGAGGATGTCGATTTTGAATATCCGGAAGCTAAAAAACAAGTCCGTGGTTCTACATCTACAAAGAGAACTCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAAAGCTTTGCAAGAGCTTATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAATCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGCCAATTAGAATGGGGATTGGCTTGGGTATGGGCATTGGCATGGAAATGGGAATGGGAATGAACAGACCGGTAATGCCATTTCCTAATATGTTAGCTAGTTCGACTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTCCCCATGCCTCCTTTCCCTATGCCCCATGTTCCTGCACCTGATTCATCCAGAATGCAACCAGCAAATCAGTCAGATAATAATATGCTTAACACAATTGGTACACTAGATCCAGATCAGTCACGTATCCCAAACTTCACTGATCCTTATCAGCAATACCTCGGTCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTCAGCAAACCTAGTACGAGTAGGGGTCGAGAGAATCCAGAAAAGCATCAATCAGACGAAACATGA 1536 0.5358 MNHCVPDFEIQMDDDEEYPIPLSKKPSTQNDEIMELLWQNGQVVMHSQNQRPFRKPPPPADTNGGDGVIPAREIRSSEAENYGNQHLLMQEEEMASWLHYPIHEDPPPFDHHDFCADILYQPQNASASQNHSSAAVQASVRTAELRHPAHRPPIPLPRRSEQAPSRVHNFAHFSKHGNASSSSKAAAAQPTVVDSCDTPATTAERAETGRVSVSAAAAKTEAASGGRETATCDVTVRSSPSGSSGSAEPDQGEPVADQKRKGREPEESEFQSEDVDFEYPEAKKQVRGSTSTKRTRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPIRMGIGLGMGIGMEMGMGMNRPVMPFPNMLASSTLPAATAAAHLGPRFPMPPFPMPHVPAPDSSRMQPANQSDNNMLNTIGTLDPDQSRIPNFTDPYQQYLGLQQVQLQLMQAMNQPNVSKPSTSRGRENPEKHQSDET 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2295 511 MobiDBLite consensus disorder prediction 484 511 - -
Ssu7g2295 511 MobiDBLite consensus disorder prediction 231 248 - -
Ssu7g2295 511 SMART finulus 302 351 IPR011598 GO:0046983
Ssu7g2295 511 CDD bHLH_AtPIF_like 296 359 - -
Ssu7g2295 511 Pfam Helix-loop-helix DNA-binding domain 300 346 IPR011598 GO:0046983
Ssu7g2295 511 Coils Coil 302 322 - -
Ssu7g2295 511 MobiDBLite consensus disorder prediction 200 303 - -
Ssu7g2295 511 MobiDBLite consensus disorder prediction 253 268 - -
Ssu7g2295 511 Gene3D - 291 354 IPR036638 GO:0046983
Ssu7g2295 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Ssu7g2295 511 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 510 IPR031066 -
Ssu7g2295 511 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 510 - -
Ssu7g2295 511 MobiDBLite consensus disorder prediction 146 165 - -
Ssu7g2295 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 362 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2295 Ssu-Chr7 45043888 45048614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2295 1 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 39.481 1.30e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g2295 HLH 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2295 - - gmx:100788491 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2295 7 45043888 45048614 Ssu7g2295 7 45043888 45048614 ECH
Ssu4g1142 4 18139934 18164228 Ssu7g2295 7 45043888 45048614 PCT