Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2290 ATGCAGATGCTCATAGACAAAGAAATGTCCAAACAAAAAGACTCCAAGCACAACCTACCAAATGTAGTAGCAAAACTAATGGGGCTTGAAACCCTTCCAAGGGGAGAGCCTAATTTATCTGTAGAGAGAAGCCCCAGAAGAGATTATTCTCAACATGTGTATGGTCCTATAGGGTTACCATTCAAGCATTGGCAGCTGGAAGATAGGTTTATGGATAGGGAAATGCTTCGTGAAGTTCATCCAAGCACAGAACAGGTTGCTTACAAAGATATGTACGAAATATGGCAGAAATCTCAGACAGCAAGCCGTGTAAGGGGCAAGATACCAGATAGAGGAAGGTGGAATGAAGATGTTGATGGGAAAAGAATGGCTCTCATTCGTCAAAAATTCATGGAAGCAAAACGTATGTCAACAGATGAGAGACTTCGCCATTCCAAGCAATTTAAAGATGCCTTGGAAGTTTTAAGCTCCAACAGTGATCTCTTAGTCAGGTTATTGGATTCTCAAAATGTTTATGAATTTTACTCAACTCCAAACGAGACAAAGCGCATTACTCTTATTAAACCTTCGAAGATGGTTGACAATGACAAATCTGCcagaaaggagaaaaagaataataggCTGATTAAGAAACCAGCAAGTGTTGATCAAGCAGCTGTATGGGAGAACAAGAATCCTGGAAACTCTGCAGATAGTCAGAAAGTTGATGAATCTCCAGTTCGAACCACTCGAATAGTGTTACTAAAGCCTAGCCCTGGGAGGACACATGAGCAAAAGGCTATGGTTTCTCCAACAACTTCCCATCAGGGACCTGAATATGATGATGTACTAGAATCCATTAGAGTGGCAAAAGAGATCACACAGCAAATGAATAGAGGCCAGAGGAGCTATCAAAAGGATAAAACTCCATATTCTACAGTGTTTTCCAATGGCTATTCTGATGATGAGAGTTCATTCAACAAATCATATCATGAGTACGCATCTGCAAATTACAGCGATTTGGAAGCTATGTCACCATTGCCAAGGCTTTCATGGGATTACATCAATGGCTGTGGCAGTCCTTACTCTACAATGTCCTTGGGTCGCGTGTCATGCTCTCCTGAGTCATCAGTGTGCAGAGAGGCAAAGATAAGACTCTCTGAAAGATGGACTATGATGACATCAGGTAATAAGGGTCATCAAGAACAAAGACATACAAGGAGAAGCTCCACCTTGGGTGAGATGCTTTCTCTTTCCCGTGTAAAGAAATCTGTAACATCCGAGGTTGAGAGTATTAATGAAGACCAAGAACCTGGCAAATCTGTTTCTTGCAGTCATTCATTCAATGCAGAAATAAGCATTGAGGGTTCTCCTAAAAATCTTCCCAGGTCAAATTCTGTGCCTGCATCTTCTACTGTCTATGAAAATGGGCTCACAGTTGAAGTTGGTGATCAGAATACTGGCAAAGCACAAGGTTCCAAGGCACGGACAAAGTCAAAGAGTATGAGATCATCATTTAAAGGGAAAGTTACCAGTTTCTTGTTCTCAAGGAGTAAGAAATCAACCAAGGAAAAACCAAGTCCATCTCAATCTAAAGATGAGTCCCAATCTGCTCTTACTGTCACTGAAACATTAGTTCTTCCAGCAAATTCACCTGAAATCCTTAGGGATGATGTGTATCAAAGCTTCAATGTGGATGGTTTTGAAGAGTGTTCTCTTGCAGCTCTATGTGAATCGTCAGGAAAAACTTCAACAGATTCTGTCTCTAACAGACAAGAAGAAGACATGATTACACTAGAGCCTGGATTGACTGTGCCAAAGCGCATGGTGACAGAGATTAACTCAAGCGAAAACCCGGATCAGCCTAGTCCAATCTCAGTGTTACAACCTCCATTTgaagattataataataatgcatcTCATGAGTCCTTGGACTATATGAAGAGTGGTGACCTCGGATCACAGGTGCCATTGAAGTCCAATTTAATTGACAAATCACCACCTATAGAATCAATAGCTAGGACCCTATCATGGGATGATTCTTGTGCAGAAGTGGCAAGCCCTTATCCATTAAAACCCCAGATGGTTTCTTCCTTGGACTCCAAGgtagaggaacaagagtggctTCTCTTGGTCCACAAACTACTATCAGCAGCAGGACTTGATGATCAACACGAATACGACTCGTTTTACACTAGATGGTATTCCCTTGAAAGCCCATTGGACCCATCACTGAGGGACACATATGCCAACCTAAATGAGAAGGAGCCTCAGCCAATGCATGAGGGCAGAAGAAGGAAGATGAGATCAAACCATAAACTTGTGTTTGACTATGTCAATGCTGCACTATTGGAAATTGTTGGTTATGGATCAGAAAAGTGTTTAAAGAGCAGTGGGAGCCACTGCAGAGTCCTAGTCCAGGAGGGTGCATCAGCATCTCCCTTATTGGTGGACCACATTGTGGCCCAAATGAAGGAATTAATAGCAAGTGGGATGAGGTGTGAGTGGGAGGATGGTGGGGACAGCAACAGCCTGGTGGTAGAAAATGTTGTCAGAAAAGAGGTTGTGCGGATAGGGTGGGTTGAGCTTATGGAATTGGAGATTGATATTTTGGGGAAGGAGATAGAGGGGGAGTTGATTGAAGAACTTGTGGAGAATGCAGTGATTGATTTTACAGGCAGGGCCTGA 2667 0.4154 MQMLIDKEMSKQKDSKHNLPNVVAKLMGLETLPRGEPNLSVERSPRRDYSQHVYGPIGLPFKHWQLEDRFMDREMLREVHPSTEQVAYKDMYEIWQKSQTASRVRGKIPDRGRWNEDVDGKRMALIRQKFMEAKRMSTDERLRHSKQFKDALEVLSSNSDLLVRLLDSQNVYEFYSTPNETKRITLIKPSKMVDNDKSARKEKKNNRLIKKPASVDQAAVWENKNPGNSADSQKVDESPVRTTRIVLLKPSPGRTHEQKAMVSPTTSHQGPEYDDVLESIRVAKEITQQMNRGQRSYQKDKTPYSTVFSNGYSDDESSFNKSYHEYASANYSDLEAMSPLPRLSWDYINGCGSPYSTMSLGRVSCSPESSVCREAKIRLSERWTMMTSGNKGHQEQRHTRRSSTLGEMLSLSRVKKSVTSEVESINEDQEPGKSVSCSHSFNAEISIEGSPKNLPRSNSVPASSTVYENGLTVEVGDQNTGKAQGSKARTKSKSMRSSFKGKVTSFLFSRSKKSTKEKPSPSQSKDESQSALTVTETLVLPANSPEILRDDVYQSFNVDGFEECSLAALCESSGKTSTDSVSNRQEEDMITLEPGLTVPKRMVTEINSSENPDQPSPISVLQPPFEDYNNNASHESLDYMKSGDLGSQVPLKSNLIDKSPPIESIARTLSWDDSCAEVASPYPLKPQMVSSLDSKVEEQEWLLLVHKLLSAAGLDDQHEYDSFYTRWYSLESPLDPSLRDTYANLNEKEPQPMHEGRRRKMRSNHKLVFDYVNAALLEIVGYGSEKCLKSSGSHCRVLVQEGASASPLLVDHIVAQMKELIASGMRCEWEDGGDSNSLVVENVVRKEVVRIGWVELMELEIDILGKEIEGELIEELVENAVIDFTGRA 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2290 888 MobiDBLite consensus disorder prediction 221 236 - -
Ssu7g2290 888 Pfam DUF761-associated sequence motif 20 33 IPR032795 -
Ssu7g2290 888 Pfam Protein of unknown function (DUF3741) 127 170 IPR022212 -
Ssu7g2290 888 PANTHER DUF3741 FAMILY PROTEIN 1 887 - -
Ssu7g2290 888 MobiDBLite consensus disorder prediction 471 510 - -
Ssu7g2290 888 MobiDBLite consensus disorder prediction 471 532 - -
Ssu7g2290 888 MobiDBLite consensus disorder prediction 607 634 - -
Ssu7g2290 888 MobiDBLite consensus disorder prediction 258 272 - -
Ssu7g2290 888 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 1 887 - -
Ssu7g2290 888 MobiDBLite consensus disorder prediction 221 240 - -
Ssu7g2290 888 Pfam Domain of unknown function (DUF4378) 705 878 IPR025486 -
Ssu7g2290 888 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2290 Ssu-Chr7 44939256 44942710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2290 1 885 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 38.955 1.87e-151 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2290 - - gmx:100787955 1417.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2290 7 44939256 44942710 Ssu7g2290 7 44939256 44942710 ECH
Ssu4g1147 4 18249978 18254375 Ssu7g2290 7 44939256 44942710 PCT