Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2272 ATGTCAACCCCGCGCATCTTCCTCTTCGCTTTCCTTCGTTTGCTGGTTTTTTCTTGCTCAGGTTCTTTTCCTGCAGTGAACTCAGTTTCTATGAATGTGCCATTTGCTTCATCTGATCGAGCTAAAATGTGGTTAGTTAAACCTTCTTCTGGGCCATCTTTTGCTCATGTGCAGTCTCCATCTTATCAAgGTCCAATTGTGACTCCAAGACCAGAACTTCCTCATTATCACCATCGTCGCCACCATGTGAAACCTTATGCTGTGGCTCCATCCCCTTCTAAAGATCAAGTTTGTAGCCAAATCTGTACAGATCCATTCACTCCAACTCCTTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTAGTACTGGATGCAGCTCCTTTGGCTGTTTTTCCAGTAATTAATGAGTTAGAGATTGAAGTTGCATCTGGAACATATTTGAAGCAGAGCCAGGTGAGGATAATGGGTGTCAGTGCTGATGGTCAAAATCAGGGAAGAACCATAGTTGATATTAACTTGGTTCCACTTGGGGAAAATTTTGACAATACCACCGCAGTTCTGTTGTATGAGAGGTTTTGGCACAAGGAAGTTCCTCTAAATAGGAGCCGTTTTGGTGATTATGCAATCTTGTACATTGCTTATCCAGGGATACCATCATCGCTGCCACCTGGAACCTTAATTGCTAGGGGTCCCTTGCCCAGTGATAGTGTTGGTGTTCTCCCAATCACTGCCGACTTGATCAGCgataatgagaaaatgaatcTTAGAACCATAATCATCATTGCTCTGTCTTCCGTTGTactcttgttggttttggttggAGCATTTTCCATCATTTTGAAATGGAGGAAAATTAGGAGACCGTCAAGTGCTGTTGGCCCTGCATTCATATCATATCTAAACAAGAGATCTGCCACGGAATCTATGTTATCAAGCAGAATTATGAGCTCAAGATCTATGTCCCTTGTGTCCACTATTGCTGCTTCTATTCTCTCTGTTAAAACGTTTTCCTTTTCTGAGCTTGAGAAAGCAACAGCAAAGTTCAATTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGATGTGTTTATTGTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAAGGGATAATCAGAATGGAGACCGTGAATTTATTGCGGAAGTTGAGATGCTAAGCCGTTTGCATCATCGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCGAAGGCGTTGCTTGGTGTATGAGCTTGTCCGCAATGGTAGTGTTGAGTCTCATTTACATGGTGATGACAAGAAAAGCAGCCCTCTAGATTGGGAAGCACGGACAAAAATTGCCCTTGGAGCTGCGAGAGGATTGGCCTATCTACATGAGGATTCTAATCCTCGTGTAATTCACCGAGACTTTAAAGCTAGCAATGTGTTGTTAGAAGATGACTTTACCCCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCGACTGAAGGAAGTCGTCATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGACATTTACTCGTTAAAAGTGATGTATATAGTTATGGTGTTGTGCTGCTTGAACTTCTAACAGGAAGAAAACCAGTGGACATGTCTCAACCTCCTGGACAGGAGAATCTTGTAACGTGGGCTCGACCACTGTTGACAAGTAGAGAAGGTTTAGAAAAGCTGGCGGATCCATCTTTGGCTGGAAGCTATGACTTTGATGACATGGCAAAGGTGGCTGCTATTGCTTCCGTGTGCGTACACCCGGAGGTCACTGAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCTACAACAACACCAATGAGAGTCGGAAGGAGTCTTCTACCCAGGAGTCTGATTTTGGAGGTGACCTTCCCTTTTCTGATGGCAGTTGGTTGGATGCTGATGGGGTAACCCCACGATTAACTTACGGGCTAGCATCTTCCTTCATCACAATGGAATACAGTTCTGGTCCACTTGAAATGGAAAACAGACCGTTTTCAGCTTCAAGCTTGAATGGAGATCAGATATCTTTACCAATGAAGCACGGGAATAGATCAGGTCCCTTGAAAACAGCCCGGAGCAAGCTATCCTATTATAAGCTTACTCGAAGTCGGAGTGAACATGGGGTTCATCCTTCCAAGCGTGTTGGGAATGATGATGGTTACTGGGTTTAA 2250 0.4293 MSTPRIFLFAFLRLLVFSCSGSFPAVNSVSMNVPFASSDRAKMWLVKPSSGPSFAHVQSPSYQGPIVTPRPELPHYHHRRHHVKPYAVAPSPSKDQVCSQICTDPFTPTPFGSPCGCVFPMKVRLVLDAAPLAVFPVINELEIEVASGTYLKQSQVRIMGVSADGQNQGRTIVDINLVPLGENFDNTTAVLLYERFWHKEVPLNRSRFGDYAILYIAYPGIPSSLPPGTLIARGPLPSDSVGVLPITADLISDNEKMNLRTIIIIALSSVVLLLVLVGAFSIILKWRKIRRPSSAVGPAFISYLNKRSATESMLSSRIMSSRSMSLVSTIAASILSVKTFSFSELEKATAKFNSQRVLGEGGFGCVYCGTLDDGNEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKKSSPLDWEARTKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGQENLVTWARPLLTSREGLEKLADPSLAGSYDFDDMAKVAAIASVCVHPEVTERPFMGEVVQALKLIYNNTNESRKESSTQESDFGGDLPFSDGSWLDADGVTPRLTYGLASSFITMEYSSGPLEMENRPFSASSLNGDQISLPMKHGNRSGPLKTARSKLSYYKLTRSRSEHGVHPSKRVGNDDGYWV 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2272 749 CDD STKc_IRAK 358 627 - -
Ssu7g2272 749 MobiDBLite consensus disorder prediction 728 749 - -
Ssu7g2272 749 MobiDBLite consensus disorder prediction 690 715 - -
Ssu7g2272 749 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Ssu7g2272 749 Gene3D Transferase(Phosphotransferase) domain 1 428 648 - -
Ssu7g2272 749 ProSiteProfiles Protein kinase domain profile. 352 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2272 749 Pfam Protein tyrosine and serine/threonine kinase 354 623 IPR001245 GO:0004672|GO:0006468
Ssu7g2272 749 Gene3D Phosphorylase Kinase; domain 1 325 427 - -
Ssu7g2272 749 SUPERFAMILY Protein kinase-like (PK-like) 332 626 IPR011009 -
Ssu7g2272 749 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 9 744 - -
Ssu7g2272 749 MobiDBLite consensus disorder prediction 690 704 - -
Ssu7g2272 749 PANTHER OS01G0750732 PROTEIN 9 744 - -
Ssu7g2272 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2272 Ssu-Chr7 44692684 44704746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2272 99 735 Receptor kinase-like Gene Family AT5G56890 53.153 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Ssu7g2272 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2272 - - gmx:100790546 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2272 7 44692684 44704746 Ssu7g2272 7 44692684 44704746 ECH