Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2268 ATGGCGCTATGGATGGAAAAGGGTTCGGAGCCCTTAACCGAAAGCGAGAAGGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTGCTGCCTCTGAACTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGGGCAATCAATCAGAAAGCTTTGAGTGACTCTGAGACCTCTATTCTTTTTGCAAATAGAGCCCATGTGAATTTGCTGCTAGGAAATCTTAGACGTGCCCTCACTGATGCTCAAGAGGCCCTCGAGTTGTGCCCTTCAAATGTAAAGGCAATTTATAGAGCTGCCAAAGCTTCTCTTTCGCTTAATATGTTGGCTGAAGCAAGAGATTATTGTCTGAAGGGTCTTCAGTTGGACCCCAATAAAGAGGAATTGAAGAAGCTTGACCGGCAGATTGGTCTTAAGATATCAGAGAATGAGAAGCATGAGGCTGAAGTCTCCAAGGCTGTTGCAGAGACAAAGGAACTTGTGTCTGCAATAGAACATAGAGGCTTGAAGATCGGAAAGGCAATGTACCAGGAGCTTACTGGATTAAGGAAACCTGTGTTGGATAAAAGTAATATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTCGGTTCACCTTGATATGATATTTGCAGAAGATCAGCCGTTGTCATGGGATGTTGAAAATAACTACAAAcgcaaatttattgaattatactATGAGGCTGGTTCTGGACTTTGTCTATCTAAGGAAAAACTTCTTCATTGTCTGTTGGAGGGAACTGCAGCTTCTCACAGGGAAGGTGTTGGTGATGAAGAGAAAGATGCAGTTGAGGATTTTAAGCGACATAATGGTTCCCCTAAATGGATAAAAGTGAATGAAAGGAGAACACTCCATGATGTTCTTAAAGAGCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCTAAGCGATCCAGCTTTTACAGCAAGTTCAAAGCTGGAAAGTGGGCTCCTCCAAGTATATGA 1083 0.422 MALWMEKGSEPLTESEKADLEAIAALKESAASELKEKGNQYVKMGKKHYSDAIDCYTRAINQKALSDSETSILFANRAHVNLLLGNLRRALTDAQEALELCPSNVKAIYRAAKASLSLNMLAEARDYCLKGLQLDPNKEELKKLDRQIGLKISENEKHEAEVSKAVAETKELVSAIEHRGLKIGKAMYQELTGLRKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMIFAEDQPLSWDVENNYKRKFIELYYEAGSGLCLSKEKLLHCLLEGTAASHREGVGDEEKDAVEDFKRHNGSPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKRSSFYSKFKAGKWAPPSI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2268 360 Gene3D Tetratricopeptide repeat domain 26 155 IPR011990 GO:0005515
Ssu7g2268 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 356 - -
Ssu7g2268 360 Coils Coil 17 37 - -
Ssu7g2268 360 Pfam Tetratricopeptide repeat 106 137 IPR019734 GO:0005515
Ssu7g2268 360 Pfam Cns1/TTC4 Wheel domain 201 267 IPR044059 GO:0051879
Ssu7g2268 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 356 - -
Ssu7g2268 360 SUPERFAMILY TPR-like 21 157 IPR011990 GO:0005515
Ssu7g2268 360 SMART tpr_5 71 104 IPR019734 GO:0005515
Ssu7g2268 360 SMART tpr_5 105 138 IPR019734 GO:0005515
Ssu7g2268 360 SMART tpr_5 31 66 IPR019734 GO:0005515
Ssu7g2268 360 Coils Coil 141 161 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2268 30 160 Calmodulin-binding Proteins AT3G25230 33.803 2.46e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2268 K24927 - gmx:100783179 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2268 7 44627354 44631948 Ssu7g2268 7 44627354 44631948 ECH