Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2265 atgcccttttttttttcaataatggGTGTGGCACGTTTTTTCCATGATATCCTAGGATTGCCCGTGTTGGAACTTGCGACAATCTGCGTGAACCtgacttttgttcttttgtttctctttgTTGTCTCGGTGAGGCGCGTGCTTGTGTACGAGGGTGGATTTCGATTTGGTAAGGATGGAGACAGCGGCAATGGGAGCCCAAATTGTAGCATCATTGATGGAGAAACGCGTGGTGTTAGAATCGGTGTTGTGTTCAAGTTGTCAGTGTtgtgttgtttctatgttttgttTGCGCAGGTTTTGGTGTTGGGGTTTGATGGGGGTGCTTTGATTTGGGGTGAGGCTGACGTGGATTTGTCTCTTCTATCTGTGCCTGCTGCGCAGGGTTTGGCTTGGTTTGTGCTGAGCTTCTCGGCCTTGTATTGCAAGTTCAAGGTGTCAGAGAGGTTCCCCTTTTTGTTGAGAGTTTGGTGGTTTTTCTCCTTTGTTATTTGCTTGTGTGCTTTGTATGTTGATGGGAGAGGATTTTGGGTGGAGGGTTCTAAACATCTATGTTCTCGTGCTGTTGCAAATGTTGCTGTCACACCAGCTCTTGCATTTTTGTGTGTGGTTGCAATTAGGGGTGGTACTGGTATAATAGTTTGTGGGAACAATGATCTTCAAGAGCCATTGCTTGTTGAGGAGGAACCGGGGTGTCTCAAGGTTACTCCTTATAGAGATGCTGGACTTTTCAGCTTGGCTACTCTTTCTTGGCTGAATCCACTTCTTTCCATTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCACTTGTTGCACCAAAAGATAGAGCCAAGACTAGTTACAAGGTTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATGACAATCCCTCTAAGCAGCCTTCGTTGGCTTGGGCAATTCTCAAGTCATTCTGGAAGGAAGCAGCTCTGAATGCCATCTTTGCTGGTGTGAATACTTTGGTGTCATATGTAGGTCCATACATGATAAGTTACTTTGTGGATTACTTGGGTGGCAAGGAGACTTTCCCCCATGAGGGATATATCCTTGCTGGTATATTCTTTGTGGCAAAGCTTGTGGAGACTGTGACAACTAGGCAGTGGTATCTAGGGGTGGACATTTTGGGTATGCATGTTAGGTCAGCTCTAACTGCAATGGTATATAGGAAGGGACTCAGACTCTCTAGCTCAGCCAAGCAGAGTCACACAAGTGGGGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTTCTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTTTGATTTTGTATAAGAATGTTGGAATTGCTTCTGTTGCAACATTGATTGCTACAATCATTTCCATTGTTGTCACTGTTCCTCTGGCTAGGATACAAGAAGATTATCAGGACAAGTTGATGGCAGCTAAGGATGAAAGGATGAGAAAGACATCAGAGTGTCTTAGGAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGACAGATACCGATTGAAGTTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTAAGGAAAGCACTCTATTCTCAGGCTTTCGTAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTTACTTTTGCTACTTCCATATTGTTGGGAGGACAGTTGACCGCAGGTGGTGTTCTCTCTGCTCTAGCTACTTTCAGGATTCTCCAGGAACCTCTGAGGAATTTTCCTGACTTGGTATCAACCATGGCTCAGACAAAAGTTTCTCTTGATCGCATATCTGGTTTCCTGCAGGATGAAGAATTGCAGGAAGATGCAACTATCGTCTTGCCACGTGGCATTTCTAACATGGCCATAGAAATTAAGGATGGTGTCTTCTGCTGGGACTCTTCTTTGCCTAGGCCTACCCTATCAGGGATACATATGAAAGTGGAAAGGGGGATGACTGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAGTCTAGTTTTCTTTCATGCATCCTTGGAGAGATTCCCAAGCTGTCTGGTGAAGTACGAGTGTGTGGCTCTGTTGCATATGTCTCCCAATCTGCGTGGATTCAGTCAGGAAATATAGAAGAAAACATCCTGTTTGGCACCCTAATGGATAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGTGACAGAGGTATAAATTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTACCTCCTTGACGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTATTTAGGGAGTATGTATTGACAGCACTAGCAGATAAGACAGTCATTTTTTTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATACTGGTTCTTAAAGAAGGCCACATCATACAGGCAGGAAAATATGATGATCTTTTACAAGCAGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTAATCACTCAGAAGATTCAGATGAAAATGTACCCTTGGATGAATCTGTTATGACCAGTAAGACATCCATTTCTTCTGCAAATGATATTGACAGTTTGGCAAAGGAAGTTCAAGAGGGATCGTCAGATCAGAAAGCAattaaggagaaaaagaaagcaaaacgCTCTAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTACTTGTCATACATGGCTGCAGCATATAAAGGTTTATTGATTCCACTCATAATCATTGCACAAACATTATTTCAGTTCCTCCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACCGAGGGAGACCAACCCAAAGTAACTCCCACGGTTCTTCTTCTTGTTTACATGGCCCTCGCTTTTGGCAGCTCATGGTTCATATTTGTGAGGGCTGTTCTCGTGGCTACATTTGGTCTAGCAGCTGCACAGAAACTATTTTTCAACATGCTTAGAAGCATTTTCCATTCACCAATGTCTTTTTTTGACTCTACACCAGCTGGAAGGATCTTGAATCGTGTTTCAATTGATCAAAGTGTCGTGGATCTTGACATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACAATACAGCTTATTGGCATTGTTGCTGTAATGACAGATGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCAATGGCTGTTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGTATTGTGAGCATCCAGAAATCTCCAATTATACATCTTTTCGGTGAATCAATTGCTGGAGCAGCCACCATTAGAGGTTTTGGTCAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCACGACCATTCTTCTGTAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACCTTTGTATTTGCTTTCTGCCTGGTATTACTTGTTAGCCTTCCCCATGGAAGTATTGATCCCAGCATGGCTGGACTTGCTGTAACATACGGCCTGAATTTAAATGCACGCCTATCACGATGGatacttagcttttgcaaacttgaaaataaaattatatccaTTGAAAGAATGTATCAGTACAGTCAAATTCCTAGTGAAGCACCAGCAATTATTGAAGACTCTCGCCCTCCATCCTCATGGCCTGAGGATGGGACAATCCAATTAATTGATCTGAGGGTCCGTTACAAGGAAAATCTTCCTGTGGTGCTTCATGGAATATCCTGCACATTTCCCGGTGGGAAGAAGATTGGAATAGTTGGTCGTACTGGCAGTGGCAAATCTACTTTGATTCAAGCATTATTTCGATTGGTTGAACCGGAAGCTGGGAGTATCCTTATAGACAACATTAATATTTCAGCAATTGGCCTTCATGACCTTAGAAGCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCTCTTGAAGAGCACTCTGATAAAGAGATTTGGGAGGCCCTAGATAAGTCTCAACTTGGAGAGATCATCCGTGAGACAGGGCGAAAGCTTGATATGCCAGTGCTGGAAAATGGAGATAATTGGAGTGTAGGACAGCGGCAACTAGTTTCTTTGGGTCGAGCTCTGCTGAAGCAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCGGTTGATACTGCTACTGATAATCTTATCCAGAAGATTATTCGTAGAGAGTTTAGAGACTGCACTGTGTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTGGTGCTGGTACTCAGTGATGGTCGAGTTGCAGAATTTGATACTCCATCAAGGCTGTTAGAGGATAAGTCATCTATATTTCTGAAGTTAGTGACCGAGTATTCATCGCGGTCAAGTGGCATACCAGACTTTTAA 4563 0.4234 MPFFFSIMGVARFFHDILGLPVLELATICVNLTFVLLFLFVVSVRRVLVYEGGFRFGKDGDSGNGSPNCSIIDGETRGVRIGVVFKLSVLCCFYVLFAQVLVLGFDGGALIWGEADVDLSLLSVPAAQGLAWFVLSFSALYCKFKVSERFPFLLRVWWFFSFVICLCALYVDGRGFWVEGSKHLCSRAVANVAVTPALAFLCVVAIRGGTGIIVCGNNDLQEPLLVEEEPGCLKVTPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPKDRAKTSYKVLNSNWERLKAENDNPSKQPSLAWAILKSFWKEAALNAIFAGVNTLVSYVGPYMISYFVDYLGGKETFPHEGYILAGIFFVAKLVETVTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDFSWYLHDMWMLPLQIVLALLILYKNVGIASVATLIATIISIVVTVPLARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRLKLEEMRGVEFKWLRKALYSQAFVTFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQDEELQEDATIVLPRGISNMAIEIKDGVFCWDSSLPRPTLSGIHMKVERGMTVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSVAYVSQSAWIQSGNIEENILFGTLMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFLTHQVEFLPAADMILVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSEDSDENVPLDESVMTSKTSISSANDIDSLAKEVQEGSSDQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDQPKVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFHSPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMTDVTWQVLLLVVPMAVVCLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERMYQYSQIPSEAPAIIEDSRPPSSWPEDGTIQLIDLRVRYKENLPVVLHGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSILIDNINISAIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIRETGRKLDMPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDKSSIFLKLVTEYSSRSSGIPDF 1520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2265 1520 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 957 1227 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2265 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1265 1504 IPR027417 -
Ssu7g2265 1520 CDD ABCC_MRP_domain1 632 831 - -
Ssu7g2265 1520 Gene3D - 626 860 IPR027417 -
Ssu7g2265 1520 MobiDBLite consensus disorder prediction 863 926 - -
Ssu7g2265 1520 ProSitePatterns ABC transporters family signature. 757 771 IPR017871 GO:0005524
Ssu7g2265 1520 CDD ABC_6TM_ABCC_D1 319 606 IPR044746 GO:0140359
Ssu7g2265 1520 SUPERFAMILY ABC transporter transmembrane region 307 614 IPR036640 GO:0005524|GO:0016021
Ssu7g2265 1520 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 318 598 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2265 1520 Coils Coil 912 932 - -
Ssu7g2265 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 854 IPR027417 -
Ssu7g2265 1520 CDD ABCC_MRP_domain2 1272 1492 - -
Ssu7g2265 1520 SUPERFAMILY ABC transporter transmembrane region 954 1254 IPR036640 GO:0005524|GO:0016021
Ssu7g2265 1520 MobiDBLite consensus disorder prediction 878 900 - -
Ssu7g2265 1520 Pfam ABC transporter transmembrane region 321 586 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2265 1520 Pfam ABC transporter transmembrane region 957 1201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2265 1520 SMART AAA_5 659 840 IPR003593 -
Ssu7g2265 1520 SMART AAA_5 1300 1485 IPR003593 -
Ssu7g2265 1520 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 68 1520 - -
Ssu7g2265 1520 Gene3D ABC transporter type 1, transmembrane domain 916 1255 IPR036640 GO:0005524|GO:0016021
Ssu7g2265 1520 Gene3D ABC transporter type 1, transmembrane domain 286 615 IPR036640 GO:0005524|GO:0016021
Ssu7g2265 1520 Pfam ABC transporter 650 784 IPR003439 GO:0005524
Ssu7g2265 1520 Gene3D - 1257 1510 IPR027417 -
Ssu7g2265 1520 CDD ABC_6TM_ABCC_D2 955 1249 IPR044726 GO:0140359
Ssu7g2265 1520 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 632 855 IPR003439 GO:0005524
Ssu7g2265 1520 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1274 1508 IPR003439 GO:0005524
Ssu7g2265 1520 Pfam ABC transporter 1291 1439 IPR003439 GO:0005524
Ssu7g2265 1520 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 68 1520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2265 Ssu-Chr7 44573605 44582070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2265 632 1507 Calmodulin-binding Proteins AT2G36910 24.074 1.52e-52 201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2265 7 44573605 44582070 Ssu7g2265 7 44573605 44582070 ECH
Ssu4g1173 4 18794487 18802252 Ssu7g2265 7 44573605 44582070 PCT