Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2260 ATGCAGCTGAGAACTCAGTTTCTCTTCTACTTCTGCTGCATTTGCTGTTTCTCTTATGGCTTTGCTGCTGCAGCAAATGATGAAGCATCTGCTTTACTTTCTATAAAAGAAGGTCTCATTGATCCATTGAATAGCCTGCATGATTGGAAATTGTTGGACAAAGCAGAAGGGAAGGATGCAGCTCATTGTAACTGGACTGGTGTCCAGTGCAACTCACGTGGAGCTGTAGAGAAGCTTGATCTCTCCCGCATGAATCTGAGTGGCATTGTGTCCAATGAGATACAAAGGTTCAAGAGTCTCACTTCTCTCAACTTGTGTTGCAATGGATTTTCCTCATCATTGTCATCCATAGCCAATCTCACCACACTGAAGAGTCTTGATGTGAGCCAGAATTTCTTCACTGGTGACTTTCCATTAGGCCTTGGAAAGGCATCAGGACTAATAACCTTAAATGCATCCAGCAACAATTTCTCTGGCTTTCTTCCTGAGGATCTTGGAAATGTCTCTTCCTTGGAGACTTTGGATCTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCAAAATCCTTCAGTAACTTGCACAAGTTGAAGTTCCTTGGTTTATCTGGGAATAATCTCACTGGGGAAATCCCAGGAGAGCTGGGACAACTTTCATCACTGGAGTGCATGATCATTGGGTACAATGAATTTGAAGGAGGGATTCCAGCAGAGTTTGGAAATCTCACCAACCTGAAGTATCTTGATGTAGCGGAAGGCAATCTTGGTGGTGAAATTCCAGCTGAGTTGGGAAAGCTCAAACTGTTGAATACAGTTTTCTtgtacaaaaacaaatttgaaggCAAGATTCATCCATCAATTGGCAACATGACTTCATTGGTGCAGCTGGATCTCTCAGACAACATGTTAGCAGGAAATATTCCAGCTGAAATAAGTCAGCTGAAGAATTTACAGCTTCTGAACTTCATGCGAAACTGGCTATCTGGTCCTGTGCCTTCTGGCCTTGGGGATTTGCCTCAACTAGAGGTGCTTGAGCTGTGGAACAATTCCTTGTCAGGGAAATTGCCTAGTAACCTTGGCAAGAATTCATCATTGCAGTGGTTGGATGTATCATCCAATTTACTCTCTGGTGAGATTCCAGAAACTCTTTGCACCAAGGGCTATCTCACCAAGCTTATACTCTTCAATAATGCCTTCTTGGGTCCAATTCCAGCTAGCCTATCAACATGTCCTTCACTTGTTCGTGTTCGAATTCAGAACAATTTTCTTTCTGGGACAATTCCTGTGGGTCTTGGTAAGCTTGGGAAGCTTCAGAGGTTAGAATTGGCAAACAATAGTCTCACTGGTGGAATTCCTGATGACATTGGTTCATCTACATCCCTTTCTTTCATTGATTTTTCCAGAAACAACCTCCACTCTTCCCTTCCTTCAACCATTATTTCCATTCCAAATCTGCAAACTTTAATTGTCTGCAACAACAACTTGAAAGGTGAAATCCCAGACCAATTCCAAGATTGTCCCTCACTTGGTGTCCTTGATCTTTCATCAAATCGATTCTCTGGAAGCATTCCAGCAAGCCTTGCATCATGTCAGAAATTGGTAAACTTGAACCTCCAGAATAACCAATTGACTGGTGAAATCCCAAAAGCATTAGCAAGCATGCCTACATTGGCCATTCTTGATCTTGCTAACAACTCTCTGAGTGGTCAAATTCCTGAAAGCTTTGGTATTTCTCCAGCTCTGGAAACATTCAATGTCTCACACAACAAGCTAGAAGGTCCTGTCCCAGAAAATGGCGTGCTAAGAACAATAAACCCAAATGATCTCACAGGCAATGCTGGCTTATGTGGTGGTGTCCTCCCTCCATGTGGTCAAACCTCTGCATATCCATTAAGGCGTGGGAGCTCACATGCAAAGCACATTATTGTAGGGTGGATCATTGGAATATCGTCAATACTAGCCATTGGGGTTGCAACTTTGGTAGCAAGATCTTTATACATAAGGTGGTACACTGATGGATTGTGCTTCCGAGAAAGATTTTATAAGGGTAGGAAGGGGTGGCCTTGGAGATTGATGGCATTTCAGAGGCTTGATTTTACAAGTAGTGACATTTTATCTTGCATCAAGGAAACAAATATGATTGGCATGGGAGCAACTGGGGCTGTTTACAAGGCTGAGATACCACAATCAAGTACAATTGTGGCAGTCAAAAAGTTGTGGAGATCAGGATCTGATATTGAAGTAGGAAGCAGTGATGACCTTGTTGGAGAGGTGAATCTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTACTAGGCTTTCTTTACAATGACACTGATGTGATGATAGTTTATGAATTTATGCACAATGGAAACCTTGGAGATGCCCTGCATGGTAAACAAGCAGGGAGATTGCTTGTAGACTGGGTTTCTCGATACAACATAGCTCTAGGAATTGCACACGGACTTGCTTATCTTCATCATGACTGTCATCCACCTGTTATCCATCGAGACATTAAGTCAAATAATATACTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTCGGGTTGGCCAAGATGATGATCCGGAAGAATGAAACAGTCTCCATGATTGCCGGATCCTATGGATACATTGCCCCTGAATATGGATACTCCTTGAAAGTGGATGAAAAGATTGACATTTACAGTTATGGAGTGGTTCTGTTGGAGCTTCTCACTGGAAAGCGGCCTTTAGATCCAGAGTTTGGAGAATCTATAGACATAGTAGGGTGGATTAGAAGGAAGATAGACAACAAATCTCCAGAAGAAGCATTAGACCCCAGTGTTGGAAACTGCAAGCATGTTCAAGAAGAGATGCTTTTAGTTCTCAGAATAGCACTTCTTTGCACTGCCAGGTTCCCCAAGGACAGACCCTCCATGAGGGATGTTATAATGATGCTTGGAGAGGCAAAGCCTCGGAGAAAGAGTGGTAGGAACAGCGATTCATTTGCAGCTAACAAGGACATGCCAGTTATTAGCACATCACCAGTTAATGACCTTCTGTAG 3048 0.4262 MQLRTQFLFYFCCICCFSYGFAAAANDEASALLSIKEGLIDPLNSLHDWKLLDKAEGKDAAHCNWTGVQCNSRGAVEKLDLSRMNLSGIVSNEIQRFKSLTSLNLCCNGFSSSLSSIANLTTLKSLDVSQNFFTGDFPLGLGKASGLITLNASSNNFSGFLPEDLGNVSSLETLDLRGSFFEGSVPKSFSNLHKLKFLGLSGNNLTGEIPGELGQLSSLECMIIGYNEFEGGIPAEFGNLTNLKYLDVAEGNLGGEIPAELGKLKLLNTVFLYKNKFEGKIHPSIGNMTSLVQLDLSDNMLAGNIPAEISQLKNLQLLNFMRNWLSGPVPSGLGDLPQLEVLELWNNSLSGKLPSNLGKNSSLQWLDVSSNLLSGEIPETLCTKGYLTKLILFNNAFLGPIPASLSTCPSLVRVRIQNNFLSGTIPVGLGKLGKLQRLELANNSLTGGIPDDIGSSTSLSFIDFSRNNLHSSLPSTIISIPNLQTLIVCNNNLKGEIPDQFQDCPSLGVLDLSSNRFSGSIPASLASCQKLVNLNLQNNQLTGEIPKALASMPTLAILDLANNSLSGQIPESFGISPALETFNVSHNKLEGPVPENGVLRTINPNDLTGNAGLCGGVLPPCGQTSAYPLRRGSSHAKHIIVGWIIGISSILAIGVATLVARSLYIRWYTDGLCFRERFYKGRKGWPWRLMAFQRLDFTSSDILSCIKETNMIGMGATGAVYKAEIPQSSTIVAVKKLWRSGSDIEVGSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDTDVMIVYEFMHNGNLGDALHGKQAGRLLVDWVSRYNIALGIAHGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGKRPLDPEFGESIDIVGWIRRKIDNKSPEEALDPSVGNCKHVQEEMLLVLRIALLCTARFPKDRPSMRDVIMMLGEAKPRRKSGRNSDSFAANKDMPVISTSPVNDLL 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2260 1015 SMART serkin_6 706 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2260 1015 Pfam Protein kinase domain 708 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2260 1015 SUPERFAMILY Protein kinase-like (PK-like) 700 981 IPR011009 -
Ssu7g2260 1015 MobiDBLite consensus disorder prediction 996 1015 - -
Ssu7g2260 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Ssu7g2260 1015 Gene3D Transferase(Phosphotransferase) domain 1 791 1004 - -
Ssu7g2260 1015 ProSitePatterns Protein kinases ATP-binding region signature. 712 736 IPR017441 GO:0005524
Ssu7g2260 1015 SMART LRR_typ_2 288 312 IPR003591 -
Ssu7g2260 1015 SMART LRR_typ_2 432 456 IPR003591 -
Ssu7g2260 1015 SMART LRR_typ_2 480 503 IPR003591 -
Ssu7g2260 1015 SMART LRR_typ_2 192 216 IPR003591 -
Ssu7g2260 1015 SMART LRR_typ_2 336 360 IPR003591 -
Ssu7g2260 1015 MobiDBLite consensus disorder prediction 985 1015 - -
Ssu7g2260 1015 Gene3D Phosphorylase Kinase; domain 1 706 790 - -
Ssu7g2260 1015 Pfam Leucine rich repeat N-terminal domain 25 71 IPR013210 -
Ssu7g2260 1015 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Ssu7g2260 1015 Gene3D Ribonuclease Inhibitor 384 625 IPR032675 -
Ssu7g2260 1015 SUPERFAMILY L domain-like 59 381 - -
Ssu7g2260 1015 Gene3D Ribonuclease Inhibitor 24 178 IPR032675 -
Ssu7g2260 1015 ProSiteProfiles Protein kinase domain profile. 706 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2260 1015 PANTHER UNNAMED PRODUCT 2 997 - -
Ssu7g2260 1015 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515
Ssu7g2260 1015 SUPERFAMILY RNI-like 281 591 - -
Ssu7g2260 1015 Gene3D Ribonuclease Inhibitor 179 281 IPR032675 -
Ssu7g2260 1015 Gene3D Ribonuclease Inhibitor 282 383 IPR032675 -
Ssu7g2260 1015 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2260 Ssu-Chr7 44538734 44542017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2260 4 1015 Receptor kinase-like Gene Family AT1G08590 60.524 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu7g2260 Pkinase 7.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2260 - - gmx:100788430 1887.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2260 7 44538734 44542017 Ssu7g2260 7 44538734 44542017 ECH