Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2259 ATGTCAACGGTGTCCAAAGATGATAACTTGGTGCTGTCTTCGGAGGACTCTTCGTGCCCAGAAGAGTCTGAGCTTGAATTGGGCCTTGGGTTGAGCCTCTCTGGGCCTTCAAAGTCTCACCACCATGTACAtgctcctcctcctcctccttatGCTAGAATTTACACTGCTAAGGATTTTCCTTCTTCAGCAGCATCACCttcctcttcttcatcttcctctCCCAACATCACTGCTGGCACCAAGAGAGCTGCTGATTCTCTTGTTGCCAATAACCGTCCCagTCAAGTAGTTGGATGGCCTCCACTTCGATCATATAGAGTGAATAGCTACAATAGCCATGCAAAATCAAATGAACTATTCAACTCTGTGGCTGAGAAGAATAAGAGCAATAATACTGCGGTCAGGAAGAGTGCTGGCAATGGCAATGATGATAACATTAATGCCAAGGAAAAAAGACACCTCAGGAGTTCCCTGTTTGTCAAGGTAAATATGGACGGAATACCAATTGGAAGGAAGGTTGATTTGAGCACTCATAGTTCCTATGAAACCTTAGCGCAAACATTGGAGGATATGTTTAATGAGTCAACTACAGTCATCACTTGCAAAGGATCAAATGGTGAGGATCATGGCATTATTATCCAAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTCGGAGATGTTCCTTGGGGGTAA 750 0.412 MSTVSKDDNLVLSSEDSSCPEESELELGLGLSLSGPSKSHHHVHAPPPPPYARIYTAKDFPSSAASPSSSSSSSPNITAGTKRAADSLVANNRPSQVVGWPPLRSYRVNSYNSHAKSNELFNSVAEKNKSNNTAVRKSAGNGNDDNINAKEKRHLRSSLFVKVNMDGIPIGRKVDLSTHSSYETLAQTLEDMFNESTTVITCKGSNGEDHGIIIQGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWG 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2259 249 ProSiteProfiles PB1 domain profile. 158 249 IPR000270 GO:0005515
Ssu7g2259 249 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 249 IPR003311 GO:0005634|GO:0006355
Ssu7g2259 249 MobiDBLite consensus disorder prediction 61 81 - -
Ssu7g2259 249 MobiDBLite consensus disorder prediction 1 101 - -
Ssu7g2259 249 MobiDBLite consensus disorder prediction 126 145 - -
Ssu7g2259 249 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 8 249 - -
Ssu7g2259 249 MobiDBLite consensus disorder prediction 126 149 - -
Ssu7g2259 249 SUPERFAMILY CAD & PB1 domains 153 248 - -
Ssu7g2259 249 MobiDBLite consensus disorder prediction 1 18 - -
Ssu7g2259 249 Pfam AUX/IAA family 68 248 IPR033389 -
Ssu7g2259 249 Gene3D - 153 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2259 Ssu-Chr7 44532695 44535580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2259 151 248 B3 DNA Binding Superfamily AT1G59750 34.694 2.88e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ssu7g2259 AUX_IAA 1.8e-48 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2259 K14484 - gmx:100779400 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2259 7 44532695 44535580 Ssu7g2259 7 44532695 44535580 ECH
Ssu4g1179 4 18844263 18848614 Ssu7g2259 7 44532695 44535580 PCT