Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2254 ATGTTGGAATTCAGAACTACTAATTCAAATGATGACTCACAAGAAGGCTCTATGATAAGATCCAGTGTTGATGTGTCGAAGGAATCACAGGCACATAGCACACTGTGTGTGGGAGGAAATAAAGATTTGGATATGTTTTCTCGCCCTTCAAATGGATCCATGAATCTTAACTCTTCTGCTACCTTGGCTGCTCTTTCTCATCGAAGTCCATTTTCTCTCGCCCACCTGAGTGGTCTGGATGATACTGTACTGGTTTCCAAGATGGACAGAACAAATGATTTTTCGCAAAGTAATGTCAGAAAGGAGCTGGAAGATCCTATGTCTCCAAATTCACATAGTTTAGTGGTTGTTCCACAGCATCAGCTTACTGCTGATGATATAAGGTCTTTTCATGATGTTAATGACCTtacaaaaggagaagaaaatgttaaaatttcatGGGTGAATGAAACTACTAATGATTTTGCACCAGCTTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTGACATTTCTCTGTCACGTATTGGGGGTGAGGACTGTTGTTCAACTTGTATTGGCAATTGTGTCTCGTTGTCTACACCCTGTGCTTGTGCAATTAAAACGGGGGGTGAATTTGCGTACACTGCTCAAGGCCTACTTAAGGAAGAATTCTTGGAAGAGTGCATTGCGATCAGTCGCAATCCTCAACAACATTTCTTCTATTGCAAAGACTGCCCACTTGAAAGATCTAAGAATGATGGTTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAGTGTGGCAACCGGGTTATCCAACGAGGAATAACTTGCAACTTGCAGGTATTTTTCACTTCAGAAGGAAAAGGATGGGGTCTTCGGACCTTAGAGGACCTGCCAAAAGGGGCATTTGTGTGCGAGTTTGTGGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTGGATGCAAATTGGGATTCAGGATATGTGAAGGACGAAGAAGCTCTATGCTTGGATGCAGCATCCTTTGGCAACACTGCCAGGTTTATCAATCACAGatgttttgacttttga 1158 0.4007 MLEFRTTNSNDDSQEGSMIRSSVDVSKESQAHSTLCVGGNKDLDMFSRPSNGSMNLNSSATLAALSHRSPFSLAHLSGLDDTVLVSKMDRTNDFSQSNVRKELEDPMSPNSHSLVVVPQHQLTADDIRSFHDVNDLTKGEENVKISWVNETTNDFAPAFNYIPQNLVFQDAYVDISLSRIGGEDCCSTCIGNCVSLSTPCACAIKTGGEFAYTAQGLLKEEFLEECIAISRNPQQHFFYCKDCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELHERNMKCTENGKYTYPVLLDANWDSGYVKDEEALCLDAASFGNTARFINHRCFDF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2254 385 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 17 384 - -
Ssu7g2254 385 MobiDBLite consensus disorder prediction 1 30 - -
Ssu7g2254 385 Pfam SET domain 302 382 IPR001214 GO:0005515
Ssu7g2254 385 SUPERFAMILY SET domain 128 382 IPR046341 -
Ssu7g2254 385 ProSiteProfiles SET domain profile. 290 385 IPR001214 GO:0005515
Ssu7g2254 385 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 17 384 - -
Ssu7g2254 385 Pfam Pre-SET motif 137 282 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu7g2254 385 SMART preset_2 133 274 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu7g2254 385 Gene3D SET domain 119 384 IPR046341 -
Ssu7g2254 385 ProSiteProfiles Pre-SET domain profile. 181 287 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2254 Ssu-Chr7 44442081 44481163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2254 266 382 C2H2 Transcription Factor Family AT2G23740 45.378 9.09e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu7g2254 Pre-SET 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2254 - - gmx:100778335 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2254 7 44442081 44481163 Ssu7g2254 7 44442081 44481163 ECH