Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2251 ATGGCATCTGAGGAGTATTGTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGAATGACCTTCTTGCTGATAACATTCATGATCTTGAGCCAAAGGTTTCAAAACCATTTTTGCAGTTTCCAGGACATCCATCCCAAGGCCATCAACAACTTCCTGCCTCATATGGAGAAAATTGCACTGGTGCTGCCCTCTCTTCCTCATCAAATTCTGCTTCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACTCCGAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGCTTAACTATATATCATGTTAAAAGCCATTTGCAGAAATACAGGACGGCTAGATATAGACCAGAGTCATCTGAAGGAGTTGCGGAGAAAAAAGCAAGTTCCATTGAAGAGATGTCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATTTTTGAGAAGCAATGTAAACCTGGAATTGAAACGTTCAAGGCACCGTCATCTACCATTGAGACTCCATCTGGAGTGTCTTCAAATGCTACGAGAGATTTCACATGCCAAAAATGA 747 0.4297 MASEEYCKQNDWQEWAERLISDDDTLTSNWNDLLADNIHDLEPKVSKPFLQFPGHPSQGHQQLPASYGENCTGAALSSSSNSASAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVAEKKASSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMIFEKQCKPGIETFKAPSSTIETPSGVSSNATRDFTCQK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2251 248 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 140 IPR006447 GO:0003677
Ssu7g2251 248 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 60 242 - -
Ssu7g2251 248 Coils Coil 174 194 - -
Ssu7g2251 248 Pfam Myb-like DNA-binding domain 88 139 IPR001005 -
Ssu7g2251 248 Gene3D - 85 144 - -
Ssu7g2251 248 SUPERFAMILY Homeodomain-like 85 140 IPR009057 -
Ssu7g2251 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Ssu7g2251 248 MobiDBLite consensus disorder prediction 226 248 - -
Ssu7g2251 248 Pfam MYB-CC type transfactor, LHEQLE motif 171 217 IPR025756 -
Ssu7g2251 248 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 60 242 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2251 Ssu-Chr7 44405106 44410128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2251 2 215 G2-like Transcription Factor Family AT4G28610 64.352 3.54e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu7g2251 Myb_DNA-binding 3.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2251 - - gmx:100793593 434.876