Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2249 ATGGCCACGAGTGCAGCCTTAACCACTGGCTCTCACTCCCGAAATGGATTCCGTTTCTCGGATGAGGAAAATGGAGACTACAATCAACACAACGATGGTCAAGCATTCTCTGTGCCCGGAAGTGTTTCTAGTGAGGATTTTGAAGGGCAATTCTACAGCAATGCAGAGAAacggaaagaaaagagaagtttAATGAGCAATGACCAAGGAGAAGATGACTACCTTTTGGCTGAGGCAAGGCAACCATTGTGGCGCAAAGTTCCAATAGCTTCAAGCCTAATCAACCCATATCGCATAGTCATAATCATGCGTCTTGTTATCCTAGTTTTCTTCTTCCACTTGCGCATCACAACTCCGGTGCATGATGCACTTGCCTTGTGGATAATCTCTGTAGTCTGTGAAATCTGGCTTGCATTATCTTGGATAGTTGACCAACTCCCCAAGTGGTTCCCTATTACTCGTGAAACTTACCTTGAACGGTTGTCCATAAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCGGTTGATATCTTTGTGACCACTGCAGACCCTTTCAAGGAACCACCTATTATAACTGCAAACACGGTTCTATCAGTGTTGTCTGTTGATTACCCTGTTGAGAAGGTTAGCTGCTATGTCTCAGATGACAGTGCATCTATGCTTCTCTTTGATACCTTGTCAGAAACTGCTGAGTTTGCGAGAATATGGGTTCCTTTTTGTAACAAGTATAACATTGAGCTAAGGGCACCTGAGTTTTATTTCTCTCAGAAACTTGATTACTTGAAGGATAAGGTGCACCCCACATTTGTTAAGGATCGCAGGGCCATGAAGAGAGAGTATGAAGAATTCAAggtgaaaattaatgtattggTTGCAAAAGCTCAGAAAAAGCCAGAAGAGGGGTGGGTGATGCAAGATGGTAACCCATGGCCTGGGAACAACATTGACGATCATCCAGGAATGATTCAGGTATGTCTAGGAAGTGCTGGTGCACTGGGCAAGGAAGGTAAGGAACTGCCAAGGCTTGTGTACATTTCACGGGAAAAACGTCCCGGCTATCAACACCACAGGAAAGCTGGTGCCATGAATGCTCTCGTTCGGGTTTCTGCTGTGCTTAGCAATGCACCTTTTGCATTGAATCTGGACTGTGACCAATACATCAATAACAGCAAGGTTCTTAGGGAGGCTATGTGCTTTTTAATGGACCCCCAACTTGGAAAGAAGTTCTGTTATGTCCAATTTCCGCGAAGGTTTGATGGCATCGATTGCAATGACAGATATGCTAATCGCAATACTGTATTCTTTGATATCAACATGAAATGCCTTGATGGGATTCAAGGTCCTGTGTATGTTGGTACTGGATGTGTGTTCAACAGGCAGGCATTATATGGCTATGAGCCACCTTCCGAGAAAAGGCCAAAGATGAAGAGTTGCTGCTGGCCTTCATGCTGCAGCTGTTGTTCTGGTGATTCTCAGTCCACATTTGATGTTGAAGAGACTGACGAAGAGCTTGAAGACTTTGATGAGGAAGAGGAATTGCCCTTCATGTCCctgaaaaatttagagaaacgATATGGACAATCACCGGTTTTCATTGCTTCTGGTTTGATGGAAGATGGTGGACTCCCAAAAGGAACCAACGCTCGATTACTGATGAAGGAAGCAATTCATGTCATAAGCTGTGACTATGAAGAGAAAACTGAATGGGGAAAAGAGATTGGGTGGCTTTATGGCTCAGTCACAGAAGACATTTTAACTGGGTTTAACATGCATTGTAGAGGATGGAAATCGGTGTACTGCATGCCCAAGAAAGCAGCTTTTAAGGGATCTGCTCCTATAAATCTATCAGACCGATTACACCAAGTTCTGAAATGGGCTCTGGGTTCTACTGAGATTTTCTTTAGTGGCTATTGCCCTTTGTGGTATGGCTATAGTGGAAAACTGAAATGGCTACAGAGGTTGGCCTACACTAATTCCATTGTCTATCCATTCACTTCCATCCCTCTGCTGATCTACTGTACAATTCCAGCTGTCTGTCTTCTGACTGGAAAGTTCATCATCCCCACTCTGTCAAACCTTGCTAGCATTTGGTTAATGGCCTTATTTATCTCCATCATCTTAACCTGTGTGCTAGAGCTTCGTTGGAGTGGGGTTAGCATTCAGGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGGGGTGTTTCTGCACACCTTTTTGCTGTATTTCAAGGTCTCCTTAAAGTTGGTGGAGTAGACACTAATTTCACTGTGAGAGCAAAATCAGCAAATGACACCGCATTTGGACAGCTCTATCTCTTCAAGTGGACTACTCTTCTCATCCCACCAACCAGTCTTGTAATCTTAAATATGGTGGGAATTGTGGCTGGAATCTCTGATGCCATTAACAATGGCTATGACTCATGGGGACCTTTCTTTGGGAAGCTTTTCTTCTCCTTGTGGGTCATTGTGCACTTATATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAACAGAACCCCTACCATTGTAGTCCTCTGGTCAATACTTCTAGCTTTAATTTTCTCAATGATTTGGGTGCGGATTGATATTTTCTTGCCAAAGCAGAAAGGTCCAGCACTCAAACAGTGTGGGATAAGATGCTAA 2652 0.4329 MATSAALTTGSHSRNGFRFSDEENGDYNQHNDGQAFSVPGSVSSEDFEGQFYSNAEKRKEKRSLMSNDQGEDDYLLAEARQPLWRKVPIASSLINPYRIVIIMRLVILVFFFHLRITTPVHDALALWIISVVCEIWLALSWIVDQLPKWFPITRETYLERLSIRFEREGEPNLLAPVDIFVTTADPFKEPPIITANTVLSVLSVDYPVEKVSCYVSDDSASMLLFDTLSETAEFARIWVPFCNKYNIELRAPEFYFSQKLDYLKDKVHPTFVKDRRAMKREYEEFKVKINVLVAKAQKKPEEGWVMQDGNPWPGNNIDDHPGMIQVCLGSAGALGKEGKELPRLVYISREKRPGYQHHRKAGAMNALVRVSAVLSNAPFALNLDCDQYINNSKVLREAMCFLMDPQLGKKFCYVQFPRRFDGIDCNDRYANRNTVFFDINMKCLDGIQGPVYVGTGCVFNRQALYGYEPPSEKRPKMKSCCWPSCCSCCSGDSQSTFDVEETDEELEDFDEEEELPFMSLKNLEKRYGQSPVFIASGLMEDGGLPKGTNARLLMKEAIHVISCDYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKKAAFKGSAPINLSDRLHQVLKWALGSTEIFFSGYCPLWYGYSGKLKWLQRLAYTNSIVYPFTSIPLLIYCTIPAVCLLTGKFIIPTLSNLASIWLMALFISIILTCVLELRWSGVSIQDWWRNEQFWVIGGVSAHLFAVFQGLLKVGGVDTNFTVRAKSANDTAFGQLYLFKWTTLLIPPTSLVILNMVGIVAGISDAINNGYDSWGPFFGKLFFSLWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLALIFSMIWVRIDIFLPKQKGPALKQCGIRC 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2249 883 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 283 468 IPR029044 -
Ssu7g2249 883 MobiDBLite consensus disorder prediction 1 15 - -
Ssu7g2249 883 Pfam Cellulose synthase 177 877 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu7g2249 883 SUPERFAMILY Nucleotide-diphospho-sugar transferases 188 699 IPR029044 -
Ssu7g2249 883 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 883 - -
Ssu7g2249 883 MobiDBLite consensus disorder prediction 29 44 - -
Ssu7g2249 883 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 1 883 - -
Ssu7g2249 883 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2249 Ssu-Chr7 44372650 44377261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2249 75 883 Cell Wall Biosynthesis AT5G17420 71.534 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2249 K10999 - gmx:100777278 1649.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2249 7 44372650 44377261 Ssu7g2249 7 44372650 44377261 ECH