Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2246 ATGAAGTGCCTACGGTCGGGGGAGTCGTTGGGAGGAACTGATGAAGTGTTTCCTTCATCTGGATCTCTTGCAAGTGCAATCAAGGACTTTTCAGCTAGTGGACATTCTTGCCTAGCAGAACAGGTTGATAAGAAGCCAGACACTGGCAACATAGAAGAAGCTGAATCATCCTTACGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTCGTGACTCCTAAGATCAAAATTGCGCTTTCCAGAAGCAGAGAACGTCGCAAGAGACATTCCCAAAATCATGCTGAACCGCAAATGTCTATACATGCTGTTGGCTTACTATTGGAAGCTGTCTTCCTAAAAGCAAAATGTTTGCAGGTTCTTGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAGGTTATTCTGGATATAGTGGAGTCTTCATTGCCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCCTGAGCAAGGCAGTTGAGGTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCTATTTTGTCTTACCGGAGAGCACTCCTTCATCAATGGAATCTTGATGCAGAGACTATAGCAAAGATTCAGAAagaatttgttgtttttcttctatataGTGGAGGAGAAGCAACACCCCCTAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATCTTGTTAAGAAAAGTCTCTCTAAACAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCACTGTCTGTTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTTCCTGGGACTATCCATAGAAGTGAAAGGTACTATGCTCTAGCTCTTAGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTCCTCAGAAAATTGTTGCATGGTAGAGAGGACCAAAACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAGCTCTAGTCTGGCAGAAGAAGGAGTAAGGTTTGCTCAGAGAGTGCTTGAGAGCTTGGATGGCAGATGTGATCAGCTAGAAAATCTTGCCAATTTCTTTCTTGGTGTTTCACTTTCAGCACAATCGAAATTGGCCATTTCTGATTCTGAGAGGTTTAGGAGACAATCTGAGGCACTTCATGCCCTAGAAACTGCTGGCAGAATGACCAAAATGAGAACACCCCTTATACTATATCATCTCAGTTTAGAATATGCAGAACAAAGGAAGTTAGAAGCTGCACTTTATTATGCAAAATGCTTTCTAAAACTGGAAGGTGGTTCTCATGTTAAAGGATGGTTACTGTTAGCCCGGATATTGTCTGCTCAAAAACAGTTTTTGGATGCCGAATCTATTATCAATGCTGCTTTGGATCAGACTGGAAAATGGGATCAGGGTCATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAATGCCATTGAGACATATACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTAAAGGTTTTGGTTCTGGGAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGatattgcttatgtatatatcaatCTTTCACAATGGCATGATGCAGAGGTGTGTCTTTCAAAATCTATGGCCATCAAACCACTCTCTGCTTCTAGATGTCATGCAATAGGCATAATGTACCAAGTAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTTGGTGATGCTTTGGACATTGATCCTGGCCATGTCGTTAGCTTAATCTCCACTGCTGTAGTTCTTAAACGATGTAGTAATCAATCAAATCCGGCAGTTAAAAGCTTTCTGATGGATGCACTACGGCACGATAGATTCAGTGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGCATCATCATTAGTTGAAGCTGCGGAATGTTTTCAAGCAGCACACTTTCTTGAAGAATCTGCACCTGTTGAACCTTTCAGATGA 2145 0.4098 MKCLRSGESLGGTDEVFPSSGSLASAIKDFSASGHSCLAEQVDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKRHSQNHAEPQMSIHAVGLLLEAVFLKAKCLQVLERFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVEVLPELWKLADCPREAILSYRRALLHQWNLDAETIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPGTIHRSERYYALALSYYGAGKDLVALDLLRKLLHGREDQNHVPGLLMASKICCESSSLAEEGVRFAQRVLESLDGRCDQLENLANFFLGVSLSAQSKLAISDSERFRRQSEALHALETAGRMTKMRTPLILYHLSLEYAEQRKLEAALYYAKCFLKLEGGSHVKGWLLLARILSAQKQFLDAESIINAALDQTGKWDQGHLLRTKAKLQIAQGQLRNAIETYTQLLAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDIAYVYINLSQWHDAEVCLSKSMAIKPLSASRCHAIGIMYQVKGLYKEALKAFGDALDIDPGHVVSLISTAVVLKRCSNQSNPAVKSFLMDALRHDRFSASAWYNLGLLHKAEGTASSLVEAAECFQAAHFLEESAPVEPFR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2246 714 SMART tpr_5 512 545 IPR019734 GO:0005515
Ssu7g2246 714 SMART tpr_5 476 509 IPR019734 GO:0005515
Ssu7g2246 714 SMART tpr_5 441 474 IPR019734 GO:0005515
Ssu7g2246 714 SMART tpr_5 134 167 IPR019734 GO:0005515
Ssu7g2246 714 SMART tpr_5 602 635 IPR019734 GO:0005515
Ssu7g2246 714 SMART tpr_5 568 601 IPR019734 GO:0005515
Ssu7g2246 714 SMART tpr_5 672 708 IPR019734 GO:0005515
Ssu7g2246 714 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Ssu7g2246 714 Gene3D Tetratricopeptide repeat domain 419 709 IPR011990 GO:0005515
Ssu7g2246 714 Coils Coil 376 396 - -
Ssu7g2246 714 SUPERFAMILY TPR-like 514 686 IPR011990 GO:0005515
Ssu7g2246 714 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
Ssu7g2246 714 PANTHER PROTEIN NPGR2 1 714 - -
Ssu7g2246 714 SUPERFAMILY TPR-like 309 505 IPR011990 GO:0005515
Ssu7g2246 714 Gene3D Tetratricopeptide repeat domain 32 412 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2246 Ssu-Chr7 44324117 44329970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2246 1 714 Calmodulin-binding Proteins AT4G28600 58.540 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2246 K21843 - gmx:100800762 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2246 7 44324117 44329970 Ssu7g2246 7 44324117 44329970 ECH
Ssu4g1204 4 19119242 19121666 Ssu7g2246 7 44324117 44329970 PCT