Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2239 ATGATGAAAGTGGGATTTGAGGTGTTTCATGGAAATAATCCAAACATGATTCGACCACACATGCATGAAACATGGGATCACTACTCAAATATTACTGCCTTGCCATTTTCAGCTCCAACCCCATCAAACCCATATCCAAAGTCAGCAACAGAAAACCACTGCCTAAACTTGGGGCAGAACGAACTCTGTGATTGGATGGAGGATCACATTAGTGACATAACCAAACACCTTGTAGAAGACTTACCAGAAACAACTTCATATAACTTGCTGGCTAGTAACCCAACAACTACAAGGGTTTCCCATCACAACCTTGTTCCCTCACCTTCACCCAACTTCAGTCAAAGAAAAACCTCATGCTTTAGACCCCAATTGGACTCCTTCACCAACAACCCCCCAAACAGCAATAATAACTTCAATCTTCACATTCAAACAAACACCTCAGGTTTGGATCATAACCACAATGTTTATGATCAAGGGTTGAACCTAATAACCCTTCTAATGGAGTGTGCAGTGGCAATCTCAGTCGACAACCTGGGTGAGGCTCACAGGATGTTACTGGAGCTAACACAAGTAGCCTCACCCTACAAAGCATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAGGCCATGGCTTGTAGGGTGGTGAACTCTTGGCTTGGGGTGTGTTCCCCTTTGGTTGATCACAGGAGCATAAACTCAGCATTCCAAGTGTTCAACAACGTTTCCCCTTTCATCAAATTTGCTCACTTCACTTCCAACCAGGCAATCCTTGAAGCAGTGAACCATTGTGACAGCATTCACATCATTGACTTGGACATCATGCAAGGGCTGCAATGGCCggcattttttcatatattagcCACCAGAATGGAGGGTCCACCACAGGTCACAATGACAGGTTTAGGAACCTCAATGGAACTCCTTGTTGAAACCGGAAAGAACCTCTCAAACTTTGCAAGAAGGCTTGGCATGTCATTGAAGTTCCACCCCATTGCAAGCAAGTTTGGGGAGGTTGATGTGTCCATGTTGCAAGTAAAGCCTGGTGAGGCAGTGGCAGTGCACTGGTTGCAGCATTCACTGTATGATGCAACTGGACCTGATTGGAAAACATTGAGGCTTCTTGAGGAGTTGGAGCCAAGAATCATCACCTTGGTGGAGCAGGATCTGAACCATGGAGGGTCTTTCTTGGACCGTTTTGTTGCCTCCTTGCACTACTACTCCACCCTCTTTGATTCTCTTGGAGCATATTTGCACTATGATGATGCCAACAGGCACCGTGTGGAGCATGGCCTGCTCTCCAGGGAGATCAACAATGTGTTGGCCATAGGAGGCCCTGCGAGGAGTGGTGAAGACAAGTTTAAGCAGTGGAGAAGTGAGCTCGGTAGGCATTGTTTTGTGCAGGTTCCAGTGAGTGCCAATTCAATGGCTCAAGCGCAGTTGATATTGAACATGTTTTCACCAGCTTATGGGTATAGCCTTGCGCAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACCAGCTTGTACACAGCTTCTGCATGGACCTGCAGTACTTCTAGCTAG 1569 0.457 MMKVGFEVFHGNNPNMIRPHMHETWDHYSNITALPFSAPTPSNPYPKSATENHCLNLGQNELCDWMEDHISDITKHLVEDLPETTSYNLLASNPTTTRVSHHNLVPSPSPNFSQRKTSCFRPQLDSFTNNPPNSNNNFNLHIQTNTSGLDHNHNVYDQGLNLITLLMECAVAISVDNLGEAHRMLLELTQVASPYKASCAERVVAYFAKAMACRVVNSWLGVCSPLVDHRSINSAFQVFNNVSPFIKFAHFTSNQAILEAVNHCDSIHIIDLDIMQGLQWPAFFHILATRMEGPPQVTMTGLGTSMELLVETGKNLSNFARRLGMSLKFHPIASKFGEVDVSMLQVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDLNHGGSFLDRFVASLHYYSTLFDSLGAYLHYDDANRHRVEHGLLSREINNVLAIGGPARSGEDKFKQWRSELGRHCFVQVPVSANSMAQAQLILNMFSPAYGYSLAQVDGTLRLGWKDTSLYTASAWTCSTSS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2239 522 ProSiteProfiles GRAS family profile. 153 517 IPR005202 -
Ssu7g2239 522 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 518 IPR005202 -
Ssu7g2239 522 Pfam GRAS domain family 162 517 IPR005202 -
Ssu7g2239 522 PANTHER OS05G0485400 PROTEIN 30 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2239 Ssu-Chr7 44156808 44158376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2239 122 517 GRAS Transcription Factor Family AT3G54220 52.854 5.41e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu7g2239 GRAS 5.3e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2239 - - gmx:100775656 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2239 7 44156808 44158376 Ssu7g2239 7 44156808 44158376 ECH