Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2238 ATGGATTCTGCAAGGAGTTGGCTTCAGAAGTTCCAGCCTCGAGATAAAACCAGGGCTGCTGCGAAGAAAAAGGAGGAGGATAGTAATGGAGGAAACCAGGACTCGAATGCAGCGGTGGATGAAGCAGCGCTTTCCGGTGTCACGAAGCAGAAGGTGGCAGCAGCAAAGCAGTACATTGAAAACCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCGGATGCTGATGTCTCTGAGGAGGATCAAAACAACCTGcttaaatttttagagaaaaaggaAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTGACAATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTCTGTAGGGAGAAGACTACTGGTCATGTATATGCAATGAAGAAACTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGgTTGAGCATGTTAAAGCTGAAAGGAATCTCCTCGCAGAGGTTGACAGCAATTGCATTGTCAAGCTTTATTGTTCTTTCCAGGATGATGAATATCTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTTATGAGAAAGGATATCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATCAAGCCCGACAACTTATTACTTGATAGATATGGACACTTGAAATTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGTACACTAGAAGAAAAGGATTTTTCTGTGGGTCAGAATGTGAATGGATCTACACAAAATGAAGAGCGCATTGCTCCAAAACGCTCACAACAGGAACAGCTGCAACATTGGCAAATGAACAGGAGGACACTTGCTTATTCCACAGTTGGTACACCGGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTACGGGATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGATAGTAAATTGGAAATCTTACTTGAAATTTCCTGAAGAAGCTAAGCTATCCACAGAGGCTAAAGATCTTATTTGTAAACTTTTGTGTAATGTCAATCAGAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGACGAGTTAGATACTCAgaattttgaaaagtttgatgAGTCTGACAGCCAAACTCAATCATCATCAAGATCTGGTCTGTGGAGGAAGATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACGTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATGGCTGAACTGAAGAAGAAACCGTCCAAATCAAAGAGGCCAACCATCAAGTCACTTTTCGATTGTGAATCAGAAACACCAGAGGTGTCTGATACGTCTGCAAATAATCAACCTGCTCAAGGAAGCTTTTTAAAGCTCTTGCCACCCCAGTTAGAGGTATCTTACAGCGACAAGAATCTTCCTCCCAAGTCCTAA 1680 0.4006 MDSARSWLQKFQPRDKTRAAAKKKEEDSNGGNQDSNAAVDEAALSGVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLKLSDFGLCKPLDCSTLEEKDFSVGQNVNGSTQNEERIAPKRSQQEQLQHWQMNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKSYLKFPEEAKLSTEAKDLICKLLCNVNQRLGSKGADEIKAHPFFKGVEWDKLYQMEAAFIPEVNDELDTQNFEKFDESDSQTQSSSRSGLWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKPSKSKRPTIKSLFDCESETPEVSDTSANNQPAQGSFLKLLPPQLEVSYSDKNLPPKS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2238 559 Pfam Protein kinase C terminal domain 438 482 IPR017892 GO:0004674|GO:0005524|GO:0006468
Ssu7g2238 559 CDD STKc_NDR_like 119 483 - -
Ssu7g2238 559 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 557 - -
Ssu7g2238 559 MobiDBLite consensus disorder prediction 1 42 - -
Ssu7g2238 559 MobiDBLite consensus disorder prediction 520 538 - -
Ssu7g2238 559 ProSiteProfiles Protein kinase domain profile. 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2238 559 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 492 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu7g2238 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Ssu7g2238 559 SUPERFAMILY Protein kinase-like (PK-like) 94 472 IPR011009 -
Ssu7g2238 559 Pfam Protein kinase domain 122 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2238 559 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 557 - -
Ssu7g2238 559 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Ssu7g2238 559 SMART pkinase_C_6 420 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu7g2238 559 SMART serkin_6 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2238 559 MobiDBLite consensus disorder prediction 518 559 - -
Ssu7g2238 559 MobiDBLite consensus disorder prediction 9 30 - -
Ssu7g2238 559 Gene3D Transferase(Phosphotransferase) domain 1 205 437 - -
Ssu7g2238 559 Gene3D Phosphorylase Kinase; domain 1 119 448 - -
Ssu7g2238 559 Coils Coil 63 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2238 Ssu-Chr7 44135671 44145281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2238 1 515 AGC Kinase Gene Family AT2G20470 80.539 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Ssu7g2238 Pkinase 5.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2238 K08790 - gmx:100779528 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2238 7 44135671 44145281 Ssu7g2238 7 44135671 44145281 ECH
Ssu7g2238 7 44135671 44145281 Ssu4g1214 4 19274303 19282767 PCT