Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2236 atggaggaagaggaggatCGAATATTGCTCTCTAGTTTGGGCGTAAAGTCTGCCAATCCCGAAGACATTGAACGCGACGTTTTGGAAAAGGCTAGGAATGATTCAGTGACCATTACTGAAGCTGAAGGTACCGCCAAGGAAGAATGTTCTCATTTACCTGAAAATGTTGATCCATCAGCTAATGGTAAAGCTGAACTTCATCAGAAGTTGAGAGCTGTCCAATTTGAAATTGGCGCGGTTGCCTCCACTGTTGAACAGTTGAGTAATGTCGAAAATAATGAAGAATGTAGTGATGTTGGTGACGACGGCTTGGCGCAAGGTGATTCCTTCAATGATTCGAACCTTCAGCGTGTTCTTGCTGCTGATAGGCTGAGGAGCCTGAAGAAGACAAAAGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCTGCGGATGATGCTTTCAAAAGCGTTGAGAACGAAGAATTGATCTTTAGTTTAGTTAGGGAAGAACGGAAGTCCAAGAGGAAGATTAAGGAAGATAAAAAATCGAACAATAGCACGGGAAAGCGGCCTAAGAAAGTCTcatttgatgatgatgttgatttTGATGCTGTTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGGCGCTTTCAACAATCTGAAACATCAACTAGTCATAATGCAACTGAGGAAGAAAATACTGGCGATCTTGTTTCTTCCAGTGTTGAAAGAGCTGCCAGATCCATGTATGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTGAAGCTGCACCAAAGCTTGATGCGCCCACTTTTCCTTTTCGCAGGCTCAAGAAACCACTACAATCTTCCAAACCTCTAGAGAGAGATTTGGAGCTGAATAAAgattcaaaaaggaaaaagaggcgGCCTTTACCTGGTAGGAAATGGACCAAGCGTGTTTCTTGTGAGGATACACATCTGGAAGAAAGTgAAAATGTAAATGGTTGCTTGGATACTTCCAGTTGTGAAAATTTAGAAGAACAAAAAGTTGAACTAGATGATCATGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAGAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTCGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGCGATGAGATGGGACTTGGGAAAACTGTCCAGGTCTTATCGTTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTCGAGCTTTTACATGATTCTGCTCAGGAGTCTGCTCCAAGAAAGAAGCGAGCTAAATCCGATGAAACAGACCATGAAAGCAATGGTTCAAGTGACAATGATTATGAGAGAAGTGTGCCATCTAGAAACACAAGAAAATGGGAAACCTTGATAAATCGTGTCATAAGATCGGAATCTGGATTACTTATTACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGACGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGCAAACAGCTACAAACTGTACACCGCATCATAATGACTGGTGCACCTATTCAAAACAAACTGACAGAACTGTGGtcattgtttgattttgttttccCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCTATATCAGTTGGTGGATATGCAAATGCTTCACCCTTACAAGTGTCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGCATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACCGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTatagagcatttttagctagcACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGGGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCGCAAGTGCTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTCCTCTTTACTCAAACCCAACAAATGCTTgacatttttgagaattttttgacaACTTCTGGTCACATTTATCGAAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATAGATGAATTTAATGCCTcaagtgaaatatttattttcattttaacaacCAAAGTTGGGGGTTTGGGGACGAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCTTCAACTGATATGCAGGCCAGGGAGCGTGCTTGGCGTATTGGTCAGAAGAAGGATGTAACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAACGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACACTTAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAATATTTTCAGTCAAATATCTGAAGAAGTAAATATCATTGGGacacataaagaaaataaggataAGTATAAACATAGCCAAACTGCTGAACTAGATTCTGAAGATGTTGCAGTTAGTAATGATGACAAATCGGAGAGAGAATCTTTAAGCGGAAAGGGGAAAGAGAAGGTTGAACATAGTAATGAGGTTGATGATGAAACAAATATACTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTATGTCAGTCACGAATGCTCCGAAGCCATGATAGTGTATCTATTCCGACATGGACAGGAAGGTCAGGAACTGCTGGAGCACCGTCGTCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATCCCCAGTTGGTAAATAATTGCAAAGCATCTGATGAATTACCCAGCAAGGGAACTAATAAGTTCAATGGATTTGCTGCTGGAGCATCTGCTGGTAAAGCATTATCTTCGGCCGAACTGTTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCTGGGCTTGAACATCAGTTTGGTATGTTGTCAAGTTCCACTAATCAAGCAAGATCTATAGATGTTAGATCTTCTAGGGCTTCTGAAAATTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGTACTTTTCTACAACAGCGAGGTGGTAGTTCCGACTCAGCCAGCATAGTTCAGTATTTCAAGGGCCGTATTCCCTCAAAAGATCTTGCCCTGTTCAAGAATCTATTAAAGGAAATTGCGACTCTGCATAAAGGATTGAATGGATCCAATTGGGTTCTGAAACCGGACTATCAATTCTGA 3663 0.4019 MEEEEDRILLSSLGVKSANPEDIERDVLEKARNDSVTITEAEGTAKEECSHLPENVDPSANGKAELHQKLRAVQFEIGAVASTVEQLSNVENNEECSDVGDDGLAQGDSFNDSNLQRVLAADRLRSLKKTKAQLEKELLNLSADDAFKSVENEELIFSLVREERKSKRKIKEDKKSNNSTGKRPKKVSFDDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQSETSTSHNATEEENTGDLVSSSVERAARSMYEAARSRPTTKLLEPEAAPKLDAPTFPFRRLKKPLQSSKPLERDLELNKDSKRKKRRPLPGRKWTKRVSCEDTHLEESENVNGCLDTSSCENLEEQKVELDDHESSYVTLEGGLRIPDNIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQESAPRKKRAKSDETDHESNGSSDNDYERSVPSRNTRKWETLINRVIRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFRDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFSQISEEVNIIGTHKENKDKYKHSQTAELDSEDVAVSNDDKSERESLSGKGKEKVEHSNEVDDETNILKSLFDANGIHSAMNHDLIMNAHDEEKMRLEEQASQVAQRAAEALCQSRMLRSHDSVSIPTWTGRSGTAGAPSSVRRKFGSTVNPQLVNNCKASDELPSKGTNKFNGFAAGASAGKALSSAELLAQIRGNQEKAIGAGLEHQFGMLSSSTNQARSIDVRSSRASENSSGLQPEVLIRQICTFLQQRGGSSDSASIVQYFKGRIPSKDLALFKNLLKEIATLHKGLNGSNWVLKPDYQF 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2236 1220 MobiDBLite consensus disorder prediction 167 187 - -
Ssu7g2236 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 917 IPR027417 -
Ssu7g2236 1220 Gene3D - 656 962 IPR027417 -
Ssu7g2236 1220 Coils Coil 117 144 - -
Ssu7g2236 1220 MobiDBLite consensus disorder prediction 300 318 - -
Ssu7g2236 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 650 IPR027417 -
Ssu7g2236 1220 SMART ultradead3 385 617 IPR014001 -
Ssu7g2236 1220 MobiDBLite consensus disorder prediction 930 976 - -
Ssu7g2236 1220 Pfam SNF2-related domain 392 714 IPR000330 GO:0005524|GO:0140658
Ssu7g2236 1220 Pfam Helicase conserved C-terminal domain 739 846 IPR001650 -
Ssu7g2236 1220 CDD SF2_C_SNF 732 857 - -
Ssu7g2236 1220 Coils Coil 1002 1029 - -
Ssu7g2236 1220 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 401 600 IPR014001 -
Ssu7g2236 1220 MobiDBLite consensus disorder prediction 234 257 - -
Ssu7g2236 1220 MobiDBLite consensus disorder prediction 1 21 - -
Ssu7g2236 1220 MobiDBLite consensus disorder prediction 234 328 - -
Ssu7g2236 1220 CDD DEXHc_ERCC6 389 599 - -
Ssu7g2236 1220 MobiDBLite consensus disorder prediction 474 504 - -
Ssu7g2236 1220 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 896 IPR001650 -
Ssu7g2236 1220 Gene3D - 356 649 IPR038718 -
Ssu7g2236 1220 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 246 1116 - -
Ssu7g2236 1220 PANTHER SNF2/RAD54 FAMILY MEMBER 246 1116 - -
Ssu7g2236 1220 SMART helicmild6 763 846 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2236 Ssu-Chr7 44106753 44113438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2236 361 899 RAD5 or RAD16-like Gene Family AT1G02670 22.602 4.12e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu7g2236 SNF2_N 5.4e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2236 K10841 - gmx:100820025 2132.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2236 7 44106753 44113438 Ssu7g2236 7 44106753 44113438 ECH