Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2231 ATGGGTCTTAGAGACATTGGTGCTTCACTGCCCCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAGTTGGTTCTTCATTACCTTTACAAAAAGATCACAAATGAGGAAGTTCTGAAGGGTACCTTGATGGAAATTGACTTGCACACGTGCGAGCCATGGCAACTCCCTGAGGTGGCTAAGCTTAATGCAAACGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATATGCAACCGGCTTTCGGACCAACCGGGCAACGACATCTGGCTATTGGAAAGCAACAGGGAAGGATCGTACGGTGTTTGACCCAGCCACGCGTGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAGGAACAGAGCTCCAAATGGCATCAAAACGGGTTGGATCATGCATGAGTTTCGCTTGGAGACGCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTTACAAAGGCAAAACAGACAACAGTGCCAAACTCAACCCACAACTCATGTATGAGAGCACAGTTCCATCCCTAACTTTGGCTTCGTCATCCCCAGCCAACCAAACCACACCGGTTGGGTATAACCAACTTGCCCCTTTCACCTCCTCAATGGCAacccatcatcatcatcattatccaAACCAAATCCAAAACAACAATTCTTTGATGAGTCTCCTCCAGTTTTCGAGGGAGGCAAACACCAACTCTAGTAGCGTTAGTCCCAAATGTGATGACGGATATGGGTTCTTGTGGGAAATGGATCTCGAAGAAAATAGCTTCCATGATGGCGCGGCCTCAAACTTGGATGGAATGAGATTCGAGGTTGATAATAGTAGTGTGGTCTTgttatga 852 0.4577 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPATREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFYKGKTDNSAKLNPQLMYESTVPSLTLASSSPANQTTPVGYNQLAPFTSSMATHHHHHYPNQIQNNNSLMSLLQFSREANTNSSSVSPKCDDGYGFLWEMDLEENSFHDGAASNLDGMRFEVDNSSVVLL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2231 283 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Ssu7g2231 283 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Ssu7g2231 283 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Ssu7g2231 283 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 278 - -
Ssu7g2231 283 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Ssu7g2231 283 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2231 Ssu-Chr7 44020350 44025103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2231 9 171 NAC Transcription Factor Family AT1G76420 56.287 4.76e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu7g2231 NAM 8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2231 - - ccaj:109788642 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2231 7 44020350 44025103 Ssu7g2231 7 44020350 44025103 ECH
Ssu4g1217 4 19378056 19384745 Ssu7g2231 7 44020350 44025103 PCT