Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2229 ATGCATATAGGTCAGACAGATACAACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAACAATGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTTGGGGTGTTAAAGCGCTTGAAACCAGTGCTTGATGACGTTATGGATTACAAAATCCCTTCAGACGTAAATCTATGTAAAAAGTGTGAGGAACTGGATACGCGGGTTAATGAAGCTAGAGATTTCATCGAAAAATGGAGTCCATTGATGAGCAAGATTCACAGTGTTCTACAAGGTGGGACATTGTTGATCAAGCTACAGAGCACTTCACTAGATATCTGTCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTTCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAATGGCAATGGTCTATATAGAAGAAGCACTGAGAAACCAAAGAGATCATATTGAACCTTGCAAGGAGCATCTCAAGGAAATTTTTGAGTTACTTAAACTGACATCAAATCAGGAGCTCTTTAAAGAAAGTGTTGCTGTGGAAAAGGAAAGGTTGAATGCCGAAGTCAATAAAATGATAGGGGACTTGgaagaaattaatgaaattgtGAATCTTGTCCGTAATTTGCGTGATTATGTGACGAAAACTGAGTGCCCTGTAGTCAAGAGTGGTGTCTCAATCCCTCCATACTTCCGCTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGATAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAAACTCGTCAGAGACTTACTCATATAAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTTAAACTCTCCGGTAACTCTGAGCACAATAAATCTTTCTGTATCACATCCACCTCGGATAATTTATTGCCTCAAGATTTACCTCACGATTGTTGTGTTGGGTCTTTACCTAGTAGCAATTCCATTTCAAGGTCATCTCTTCAAACTGAAAATGCATTTGAAAAGCAAAAGTGTGATAACTCTTTCAGATTATGTGGAGAATGCAATGGATGCCGGAGTGGAGCAACTGAAAAGTGTGAACAACAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCACATGCAGTTTCGAAAGAGTTGTCAGGGATATCCAATAAGCATCAAAATGTGAAGGTGCTGTCTGGAGAAATCACAAAGGTGTGTCCGTCTCCTGGTAACAAACAATCAGGGATATCTCCTTGGTTATCTGGAAAGCAATTTCAAAACCCTGGATCAAATGTGGGAGTGTTGGagaatggaaataataataataatagtcacTCAAGAGTTGATTCCCATCCTGTTTTCACCTCAGGATCGGATGAATTGACCACGTCATCTCATGTCAATAAATTGATTGAAGACCTTCACAGCCAAACAATTGAAACGCAAACTACTGCAGCAGAAGAATTGAGGCTCCTTACAAAGCATAACAAGGAAAACCGGATCATTGTAGGGCAGTGCGGGGCTGTCATGCCTTTGCTTTCGCTGCTATATTCAGATGTGAAAATTACACAAGAGCATGCTGTGACAGCTCTGCtgaatttatcaattaatgAAGACAACAAGGTCTTGATCATGGAAACAGGAGCCATAGAACCACTTATCCATGTTTTGAAGACAGGAAATGATAGTGCCAAGGAGAATTCAGCAGCAGCTCTATTCAGCCTTTCAGTAATTGAGAACAATAAGGCAAGAATTGGCCGTTCTGGAGCAGTTAAAGCTTTGGTGGATCTTCTTGCCTCAGGTACTCTTAGAGGAAAGAAGGATGCCGCTACTGCTTTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCGGTGAAGTTTCTGGTTCGGTTAATGGGCCATGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAACCTGTCAACAATTCCGGAGGGCCGATTAGAAATTGCAAGGGAAGGGGGCGTCCCCTTACTAGTTGAAATTGTTGAGTCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTGTGCCTTCATAGTCCTAAGTTCTGTAATCTGGTTTTGCAAGAAGGAGCAGTACCTCCCCTAGTTGGATTATCTCAATCTGGTACACCAAGGGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGTAATCTGCGGGAAGGAGCTGCTACTGGGAAGGGAAAATCATGA 2373 0.4067 MHIGQTDTTSVKCLINSISRFIHLVSCQTMKPMPFQKICNNMVGVLKRLKPVLDDVMDYKIPSDVNLCKKCEELDTRVNEARDFIEKWSPLMSKIHSVLQGGTLLIKLQSTSLDICHMIVRSLQSPPSASVLANLQHYIQELQCLKKEMAMVYIEEALRNQRDHIEPCKEHLKEIFELLKLTSNQELFKESVAVEKERLNAEVNKMIGDLEEINEIVNLVRNLRDYVTKTECPVVKSGVSIPPYFRCPLSLELMLDPVIVASGQTYDRQSIQKWLDHGLTVCPKTRQRLTHINLIPNYTVKAMIATWCEENNVKLSGNSEHNKSFCITSTSDNLLPQDLPHDCCVGSLPSSNSISRSSLQTENAFEKQKCDNSFRLCGECNGCRSGATEKCEQQSPYTHSRSESFSSSISSTDCAHAVSKELSGISNKHQNVKVLSGEITKVCPSPGNKQSGISPWLSGKQFQNPGSNVGVLENGNNNNNSHSRVDSHPVFTSGSDELTTSSHVNKLIEDLHSQTIETQTTAAEELRLLTKHNKENRIIVGQCGAVMPLLSLLYSDVKITQEHAVTALLNLSINEDNKVLIMETGAIEPLIHVLKTGNDSAKENSAAALFSLSVIENNKARIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLMGHADGMVDKAVALLSNLSTIPEGRLEIAREGGVPLLVEIVESGSQRGKENAASILLQLCLHSPKFCNLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNLREGAATGKGKS 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2229 790 Gene3D - 492 639 IPR011989 -
Ssu7g2229 790 SUPERFAMILY RING/U-box 239 315 - -
Ssu7g2229 790 SUPERFAMILY ARM repeat 499 776 IPR016024 -
Ssu7g2229 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 667 708 IPR000225 GO:0005515
Ssu7g2229 790 Gene3D - 643 782 IPR011989 -
Ssu7g2229 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 586 IPR000225 GO:0005515
Ssu7g2229 790 PANTHER U BOX DOMAIN-CONTAINING 11 784 - -
Ssu7g2229 790 Coils Coil 196 216 - -
Ssu7g2229 790 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Ssu7g2229 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 626 668 IPR000225 GO:0005515
Ssu7g2229 790 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Ssu7g2229 790 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Ssu7g2229 790 Pfam Armadillo/beta-catenin-like repeat 533 572 IPR000225 GO:0005515
Ssu7g2229 790 Pfam Armadillo/beta-catenin-like repeat 618 654 IPR000225 GO:0005515
Ssu7g2229 790 Pfam Armadillo/beta-catenin-like repeat 574 613 IPR000225 GO:0005515
Ssu7g2229 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 585 627 IPR000225 GO:0005515
Ssu7g2229 790 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 784 - -
Ssu7g2229 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 323 IPR013083 -
Ssu7g2229 790 CDD RING-Ubox_PUB 245 287 IPR045210 -
Ssu7g2229 790 SMART arm_5 574 614 IPR000225 GO:0005515
Ssu7g2229 790 SMART arm_5 615 655 IPR000225 GO:0005515
Ssu7g2229 790 SMART arm_5 533 573 IPR000225 GO:0005515
Ssu7g2229 790 SMART arm_5 696 736 IPR000225 GO:0005515
Ssu7g2229 790 SMART arm_5 656 695 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2229 Ssu-Chr7 43940675 43944755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2229 7 790 U-box Gene Family AT3G54790 54.030 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2229 - - gmx:100800949 1340.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2229 7 43940675 43944755 Ssu7g2229 7 43940675 43944755 ECH