Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2226 ATGCCGTCGCTTCTCTCGCCGGGGAAAATCCTCCGTCTGGAGATGGAGAATTTCAAGTCCTACAAGGGCCTCCAAGTCATCGGTCCCTTCTTCGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGCAAGTCGAACCTCATGGACGCCATCAGCTTCGTCCTCGGCGTCCGCACTGGCCAGCTTCGTGGCGCGCAACTCAAGGACCTCATCTACGCCTTTGACGACCGCGAGAAGGAGCAGAAAGGGCGCAAGGCCTTCGTCCGCCTCGTCTACCAGCTCGCCAACGCCACCGAGATCCAGTTCACGCGAACCATCACCAGCGCCGGTGGCAGTGAGTACCGCATCGATGGCGCCGTTGTCAACTGGGACGCCTACAACGCCAGACTCAAGTCCCTCGGCATCCTCGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAGTCCATTGCGTCGAAGAATCCCAAAGAGCTCACTGCCCTGGTAGAGCAGATATCTGGCTCTGATGAGCTCAAAAGGGATTATGAGCAGTTTGAGGAGGAAAAAGGTGCTACTGAGGAAAAATCAGCACTTGTTTACCAGAAGAAGAAGACTGTGGTTATGGAAAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATATCCGCCTGCAAGAGCAACTGAGATCGTTGATTGAAAGTGGAACTTTCTCTTGA 708 0.5438 MPSLLSPGKILRLEMENFKSYKGLQVIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRKAFVRLVYQLANATEIQFTRTITSAGGSEYRIDGAVVNWDAYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDELKRDYEQFEEEKGATEEKSALVYQKKKTVVMERKQKKEQKEEAEKHIRLQEQLRSLIESGTFS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2226 235 Coils Coil 198 228 - -
Ssu7g2226 235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 229 IPR027417 -
Ssu7g2226 235 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Ssu7g2226 235 Coils Coil 170 190 - -
Ssu7g2226 235 Gene3D - 8 232 IPR027417 -
Ssu7g2226 235 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 229 - -
Ssu7g2226 235 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 229 - -
Ssu7g2226 235 Pfam RecF/RecN/SMC N terminal domain 10 138 IPR003395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2226 Ssu-Chr7 43894020 43895754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2226 6 92 Structural Maintenance of Chromosomes family AT5G07660 38.298 4.83e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2226 K06636 - lja:Lj5g3v1073870.1 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2226 7 43894020 43895754 Ssu7g2226 7 43894020 43895754 ECH