Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2222 ATGGGGAGAGCTCCTTGCTGCGAGAAAATGGGGTTGAAGAAAGGATCATGGACTCCGGAGGAGGATCTAATTCTCATCAATCATATCAACACCCATGGCCACAAAAATTGGCGTGCCCTACCCAAACAAGCTGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTACGGTGGATAAATTATTTGAGGCCAGATATTAAACGGGGCAACTTTACCAGAGAAGAAGAGGACATGATAGTCCAGTTGCATGAAATGTTGGGGAACAGATGGTCAACTATTGCAGCAAGATTACCGGGGCGCACAGATAACGAAATAAAGAATGTGTGGCATACCCACTTGAAGAAGAGGCTGCCCCAACAAGACACAAAGACCCACGATAGAAAACAAAGTGCAAAACAAAAGCAGTCGTCATTGGacacccaaaaatccaaacaagAACAACCACCCGTGAATTTTCCCACCCATCATGTGATCAAAGCTGAAAGCACAGAGGAGAAGCCACTATCTTTTCCACAATGTTTAAGCAGTGACATGTCAACCCTCACCACCACTAGTGACACCAACGAGCACAACAGTAGTGCTATTGATCATCATCATGTATCCATGAATAACAATGTTGAATCGTTGGACGATGATTTCTGGTCTCAAGTTCTCTCAGCTGATAATTTCAATGAGACGAGCAGTTTTCTCGCCATCGGCGCGGTTGACCGAAAGTTCCAATTTTCACTCTCTCCATTATTGACCCAAGAAGGGGTCCAATCATCAAGTGTGTACGATAATGTGAACTTTTGGTATGATGTTTACATGGGAACACAGGAATTACCAAAATTATGA 831 0.4308 MGRAPCCEKMGLKKGSWTPEEDLILINHINTHGHKNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDMIVQLHEMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQQDTKTHDRKQSAKQKQSSLDTQKSKQEQPPVNFPTHHVIKAESTEEKPLSFPQCLSSDMSTLTTTSDTNEHNSSAIDHHHVSMNNNVESLDDDFWSQVLSADNFNETSSFLAIGAVDRKFQFSLSPLLTQEGVQSSSVYDNVNFWYDVYMGTQELPKL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2222 276 MobiDBLite consensus disorder prediction 110 132 - -
Ssu7g2222 276 MobiDBLite consensus disorder prediction 110 191 - -
Ssu7g2222 276 CDD SANT 69 112 IPR001005 -
Ssu7g2222 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 270 - -
Ssu7g2222 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu7g2222 276 CDD SANT 16 61 IPR001005 -
Ssu7g2222 276 Gene3D - 68 146 - -
Ssu7g2222 276 Gene3D - 13 66 - -
Ssu7g2222 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu7g2222 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu7g2222 276 SMART sant 66 114 IPR001005 -
Ssu7g2222 276 SMART sant 13 63 IPR001005 -
Ssu7g2222 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu7g2222 276 MobiDBLite consensus disorder prediction 167 189 - -
Ssu7g2222 276 PANTHER TRANSCRIPTION FACTOR MYB15 1 270 - -
Ssu7g2222 276 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Ssu7g2222 276 MobiDBLite consensus disorder prediction 133 149 - -
Ssu7g2222 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu7g2222 276 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2222 Ssu-Chr7 43843891 43847380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2222 1 276 MYB Transcription Factor Family AT2G31180 46.263 1.70e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g2222 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2222 K09422 - gmx:106794951 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2222 7 43843891 43847380 Ssu7g2222 7 43843891 43847380 ECH