Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2217 ATGGATTTTGATTCATCTTTTTTCCAGTACCAAAACCTCAACACTTCCTTTGTAAATTCCTGTGTTTCTGCAGAACCATTCCCTTGTGaggacttttttttcttcaatgaagAAAACACCCTTAACCCCTTCAACTTCACTGACCACTCACAATCACAAATCAAGGAATCATCCTCAGATTCCAACTCTTCAGGCTCTTTCGTCAGCACTGAATCACAAGAAGTGTCCTCCAATTTAACTCACACCCAAAAAGAAACACATGCATCATCACCACTATCTCCACCCAACAAGGAAACTAACGAAGAGAAGAGACCCTTCAGAGGAGTAAGGAGAAGGCCATGGGGGAAGTTTGCTGCTGAGATAAGGGACTCGACAAGAAATGGGGTTAGAGTGTGGATTGGCACATTTGACACAGCAGAGGCAGCAGCACTAGCTTATGACCAAGCAGCTTTGTCCACAAGAGGTTCCATGGCAGTGCTGAATTTCCCTGAGGAAGTGGTGAGAGAATCACTCAAAGACATGGCCCATAAGCCATGGGAAGATGGTTCCTCTCCTGTGTTGGCACTCAAGAGGAAACACACCATGAGAAGAAAGTCCAAGGCCACTCACAAAAAGAGTGCTAAAAGGGACAATGGGAGGGAGCTAGAGAACATGATTTCACAAAATGTGCTGGTGTTGGAGGACTTGGGATCTGAATACTTAGACCAACTTCTCAGCGTAACTTCTTCGATCTGA 735 0.4381 MDFDSSFFQYQNLNTSFVNSCVSAEPFPCEDFFFFNEENTLNPFNFTDHSQSQIKESSSDSNSSGSFVSTESQEVSSNLTHTQKETHASSPLSPPNKETNEEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMAHKPWEDGSSPVLALKRKHTMRRKSKATHKKSAKRDNGRELENMISQNVLVLEDLGSEYLDQLLSVTSSI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2217 244 MobiDBLite consensus disorder prediction 46 110 - -
Ssu7g2217 244 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Ssu7g2217 244 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Ssu7g2217 244 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Ssu7g2217 244 PANTHER DNA-BINDING DOMAIN 4 240 IPR044808 GO:0003700|GO:0009873
Ssu7g2217 244 CDD AP2 106 164 IPR001471 GO:0003700|GO:0006355
Ssu7g2217 244 SMART rav1_2 105 169 IPR001471 GO:0003700|GO:0006355
Ssu7g2217 244 MobiDBLite consensus disorder prediction 46 96 - -
Ssu7g2217 244 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 240 - -
Ssu7g2217 244 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Ssu7g2217 244 Gene3D AP2/ERF domain 105 165 IPR036955 GO:0003700|GO:0006355
Ssu7g2217 244 ProSiteProfiles AP2/ERF domain profile. 105 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2217 Ssu-Chr7 43744929 43745663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2217 103 238 AP2-EREBP Transcription Factor Family AT3G23240 60.294 2.93e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g2217 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2217 K14516 - gmx:100780775 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2217 7 43744929 43745663 Ssu4g0203 4 3406848 3407483 ECH
Ssu7g2217 7 43744929 43745663 Ssu7g1561 7 32769740 32770309 ECH
Ssu7g2217 7 43744929 43745663 Ssu7g2217 7 43744929 43745663 ECH
Ssu4g1236 4 19723454 19725446 Ssu7g2217 7 43744929 43745663 PCT