Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2216 ATGGAGGGAGGAAGATCGGTTTCAAACGGGAATGCAGAGGTTCGGTATAGAGGGATTCGAAGGAGGCCATGGGGTAAGTTTGCGGCGGAGATTCGTGACCCCACGAGGAAAGGGACTCGGATATGGCTGGGAACCTTTGACACGGCTGAACAAGCTGCACGGGCTTATGATGCTGCTGCTTTTCATTTTCGCGGTCACAGAGCCATTCTCAACTTCCCAAACGAGTACCAATCTACTAATCCGAACTCTTCGTTGCCTATGCCTCTCACTGTGcctccttcttcttcctcttcctcttcttacTCTGGTGATGGCGGTTTTTCTGGAGAAATGCAAGGTGATGATACTTTTGAGTTGGAGTACATGGATAATAAGTTGCTCGAGGAACTCCTTCAGGGGCAAGATAATAGACACCTCTACAAGTGA 426 0.4577 MEGGRSVSNGNAEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQSTNPNSSLPMPLTVPPSSSSSSSYSGDGGFSGEMQGDDTFELEYMDNKLLEELLQGQDNRHLYK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2216 141 MobiDBLite consensus disorder prediction 74 106 - -
Ssu7g2216 141 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Ssu7g2216 141 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
Ssu7g2216 141 PANTHER DNA-BINDING DOMAIN 8 135 IPR044808 GO:0003700|GO:0009873
Ssu7g2216 141 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Ssu7g2216 141 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Ssu7g2216 141 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Ssu7g2216 141 MobiDBLite consensus disorder prediction 74 114 - -
Ssu7g2216 141 PANTHER ETHYLENE RESPONSE FACTOR 8 135 - -
Ssu7g2216 141 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Ssu7g2216 141 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Ssu7g2216 141 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2216 Ssu-Chr7 43728355 43728780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2216 11 138 AP2-EREBP Transcription Factor Family AT3G23230 55.469 1.08e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu7g2216 AP2 8.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2216 - - gsj:114381985 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2216 7 43728355 43728780 Ssu7g2216 7 43728355 43728780 ECH
Ssu4g1237 4 19768124 19768564 Ssu7g2216 7 43728355 43728780 PCT