Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2215 ATGGCACTGAACAAGAACCACTCCTACAACAAGAAGCTTGGTTATGAAGCTCTCCCACCCATCAAAACCCAGGCTGCAGCTCTCCAACACCCCCCACAACCTGCTTCCTCAGACTATGCTTTCCCCATGTTTGTCATTGTTGTGCTCAGCATCTTGGCCACAGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAAATACTGCTCAAACTGGCGTCAGGTTAACCCAATGAGATGGATTTCCCTCCTGCGAGCTCGACACAACGAGGACCCCTTCATAGCATTCTCTCCTGCCATGTGGAACCGAGGGCTTGATGAGTCTGTCATCAGAGAAATCCCAACGTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGACCAAAATGTGTATGGCTGTGTGGTGTGTTTGACTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAATTGCAACCATGCCTTTCATTTGGACTGCATTGACATTTGGCTTCAGACCAATTCCAATTGCCCACTTTGCAGATCAAGCATTTCAGGCAACACACCCTGTCCATTGGACCATATCATAGCTCCAAGTTCTTCTCCCCAGGATTCTCAGTTGCTCTCCAACATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTCGGGGGAGAACCTGGAGCAGTGTTGCCACAGGTGCAAGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCATGGCACATAGTAGAAACCACTCAACAAGGAAGATGGAGCACTTGAAACAAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGAGCAGTTTTTTATTCAGCCCATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTGCTTGGATGCTCAAGTCATTATACAACAAAACAGGCATCAGAATGAGGCCAGTGCGAGTGAGGATTGTAGTAGCAGATGTCGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTTTGGAGAATGATGTTTGA 1047 0.4518 MALNKNHSYNKKLGYEALPPIKTQAAALQHPPQPASSDYAFPMFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISLLRARHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKGEEGEDQNVYGCVVCLTEFKEHDVLKVLPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTPCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQVQQERNDSRGSMAHSRNHSTRKMEHLKQRKCHHVSIMGDECIDIRKKDEQFFIQPIRRSFSMDSAHDRQTCLDAQVIIQQNRHQNEASASEDCSSRCRRAFFPFCYGKGSKNAVLPLENDV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2215 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 179 IPR013083 -
Ssu7g2215 348 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 345 - -
Ssu7g2215 348 MobiDBLite consensus disorder prediction 232 251 - -
Ssu7g2215 348 CDD RING-H2_PA-TM-RING 132 174 - -
Ssu7g2215 348 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Ssu7g2215 348 SUPERFAMILY RING/U-box 109 179 - -
Ssu7g2215 348 Pfam Ring finger domain 132 174 IPR001841 -
Ssu7g2215 348 SMART ring_2 132 173 IPR001841 -
Ssu7g2215 348 PANTHER RING-H2 FINGER PROTEIN ATL16 5 345 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2215 Ssu-Chr7 43449216 43450262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2215 32 311 C3H Transcription Factor Family AT1G04360 43.648 4.42e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2215 K19041 - gmx:100809883 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2215 7 43449216 43450262 Ssu7g2215 7 43449216 43450262 ECH
Ssu7g2215 7 43449216 43450262 Ssu4g1239 4 19869360 19870271 PCT