Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2212 ATGAAGAAACCCTCAGCCGCAGCGTCCCCTTCTTGCAGAGGCAGATCCAAGAAACCCAATCTCCAAAGCTCCAATGCCCAGTCGCCAAGCCCCGTTCAATTCAGCTCCAAGACGCCGGAGAAGCCGCCGCAGCGAGCCCGCAACCGCGGCGTCGCGCTCTCCGTCGCAGAAATCAGAAAGGTCGGCAGGGGTTTGTTGCAAGATCGGAAGCAAAGCAATGAAACGGCGTCGCCGCAGCAGACCAAAAGTGTTAGGAGGCAGATCTCACTGACTTCCCCTAGTAAACCCAAGACTGCTGATGATGAACCCTTCAAGCTTCCGGAAAAATATGAAATTTTGGGTAAGTTTTTCCACCACTTGGATAGTTTGATTCCAATTTTTCGTCTGAAAGGGTGGACGCCGTCGTTTACGCAGATCAGTTCCAGAATTGAATCTTTATCTGACAGGAGGTTTACTTATGGTCATCTGGCCCAGTTGAAATTTGTCTTGCCTGAGGCTATTATTATCAAGAAGATTCTAGTGCATAATGAGAGGACGAGTTGTATGGAGCGGGATCTTCACATCTCTATAAACCCTGACGTGCGAGAGTCCGACAACAGGAGAGTGCCGTTGAGGAAGTTGTTTTGGTCACGGCTACGAGATTTTTGGGAATCTCATCCTGAGGGTGATGAAATCCCAGAAGAAACATTGCCTGAGCCATTCAATCGCCCAAAGAAAGAATGTACTTTGGACATGTTGAAAACTCGTCCTCCAACAAAATTGTCATCATGCATGCGCTATACTGACATTGTCAATGATGCAGACCCTGCtaacataaatgaaaaatgttcagcACCTGTCAAGATATCAGTTGAATCGCCTAATGAGCATCTGGCAGCACCTTCTCACATGCCTCAATCCTTTACAAGGCGGTTTTCTCGGAAATCTAAAGAGAATGGAACAGATAATGTACAGAAGTCTCCATTAGATTCATTACAACCCCTGGCTTTTCCAGTTTCAGAGTCAAGCCTGAAGGAAAATCCACCCTTTGAGGATGTTGAATCTCATCTGAAACCTTCCCCAGCTAAGTTGGCTTCAGAAGCAGCTAGTAGTGAAAGGTGTCCAACAATTTGTGCTTGTCTAGAATCATCTGGTTCTCCCCTTGCTACTCCAAGCAAAACCATTGAGTACACAGAAAACAAAGATGGGTCTCTCAAGAGCATTGATGCCATGTCAACTCCAGCTAAACTTGTTTCTACTCCTATTAGGTTGATGAGTGCCACACCTGCCTTGCATCCACCCAAAAGACATTATATGAGCCCAGATGACAACTCTACCAGTTCTTTGAACAAGTTAGCGAGGCGTCCACTTCGCTCAAGGTCATTGAAATTTGATACTCCAGTGAAGAATAAGGAGGTTGTGAATGAGGACAATGCTGGTGGCTTACCAATAGATGATGATGTTTTTGACATCCTCCCAGAAAATCTTATCCAATTGGttagagaaaaggaaagaatagCAATGGAGGAAAGAGACCCGGCTATCTCACAAGCAAAGAAACGAAAAAAGAATATAGCTAGCCTCCCTAAGCTCTTTGACATGATCCGCATCTTGCTTCGACAGCGGTCTTGTATCACTAAAGTGGAGCTTGTAAGCAAGATAATCTCAAGCCGCTGTGATATTATTGACAGAAGTGAAGTTGAAGAGCAGCTAAATTTGTTGCAAGAACTAGTACCGGAATGGATTTCTGAAAAGCTGATCTCTAGTGGGGATTTGCTATTGTTcataaataaaatgttgagCCCTGAAACCATTCGAGCATCTCTTGAAGAAGCAGCAGAGTGA 1824 0.4402 MKKPSAAASPSCRGRSKKPNLQSSNAQSPSPVQFSSKTPEKPPQRARNRGVALSVAEIRKVGRGLLQDRKQSNETASPQQTKSVRRQISLTSPSKPKTADDEPFKLPEKYEILGKFFHHLDSLIPIFRLKGWTPSFTQISSRIESLSDRRFTYGHLAQLKFVLPEAIIIKKILVHNERTSCMERDLHISINPDVRESDNRRVPLRKLFWSRLRDFWESHPEGDEIPEETLPEPFNRPKKECTLDMLKTRPPTKLSSCMRYTDIVNDADPANINEKCSAPVKISVESPNEHLAAPSHMPQSFTRRFSRKSKENGTDNVQKSPLDSLQPLAFPVSESSLKENPPFEDVESHLKPSPAKLASEAASSERCPTICACLESSGSPLATPSKTIEYTENKDGSLKSIDAMSTPAKLVSTPIRLMSATPALHPPKRHYMSPDDNSTSSLNKLARRPLRSRSLKFDTPVKNKEVVNEDNAGGLPIDDDVFDILPENLIQLVREKERIAMEERDPAISQAKKRKKNIASLPKLFDMIRILLRQRSCITKVELVSKIISSRCDIIDRSEVEEQLNLLQELVPEWISEKLISSGDLLLFINKMLSPETIRASLEEAAE 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2212 607 MobiDBLite consensus disorder prediction 68 96 - -
Ssu7g2212 607 CDD Cdt1_m 102 254 IPR014939 -
Ssu7g2212 607 SMART CDT1_2 106 232 IPR014939 -
Ssu7g2212 607 Pfam DNA replication factor CDT1 like 106 204 IPR014939 -
Ssu7g2212 607 MobiDBLite consensus disorder prediction 15 41 - -
Ssu7g2212 607 Gene3D - 479 607 IPR038090 -
Ssu7g2212 607 Pfam DNA replication factor Cdt1 C-terminal domain 489 579 IPR032054 -
Ssu7g2212 607 MobiDBLite consensus disorder prediction 288 357 - -
Ssu7g2212 607 CDD Cdt1_c 484 603 IPR032054 -
Ssu7g2212 607 PANTHER DNA REPLICATION FACTOR CDT1 17 606 IPR045173 GO:0003677|GO:0030174|GO:0071163
Ssu7g2212 607 SUPERFAMILY "Winged helix" DNA-binding domain 103 234 IPR036390 -
Ssu7g2212 607 MobiDBLite consensus disorder prediction 315 333 - -
Ssu7g2212 607 MobiDBLite consensus disorder prediction 1 103 - -
Ssu7g2212 607 MobiDBLite consensus disorder prediction 424 443 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2212 405 604 Core DNA Replication Machinery Family AT2G31270 48.598 2.30e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2212 K10727 - gmx:100778818 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2212 7 43418454 43421618 Ssu7g2212 7 43418454 43421618 ECH