Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2210 ATGGCAGCTTGCAATGCTGgTGTGATCGACAACCCCTTCTTTAGGGTGTcaaaaagttttgattttgtgaAGGAGAAGAAAATGGGTAGCAACTTGCACCGACTGCTCAGAAGCTTCTGTTTGGGTACTGATTGGAAGTATGCCATCTTTTGGAGGCTCAAACATCGGGCTCGGATGATCTTGACATGGGAGGATGCTTACTATGACAATCCTAATAGTTGTGACTCTTCCAAAAATAAGAGCTGCCAGAATACATTGGAACAGATTGGCGGTGCTGGTTTTTTGCATGATCCTCTAGGGTTAGCTGTGGCAAAGATGTCCTATCATGTATATTCGTTAGGGGAAGGAATTGTTGGACAGGTAGCTGTGACCGGAAAGCATCGGTGGATCTGTGTAGATAATCAAGTTACAAGTTCTGGCCCATCCTTCGAGTTTGCTGATGGGTGGCAATCTCAGTTTTCTGCCGGAATTAGGaccattgttgttgttgcggTAGTCCCCCTTGGAGTTGTTCAACTTGGCTCTTTAAATAAAGTTACTGAAGATATGGGCATTGTAAGCTGTATCCGGAGTCTCTTTTTGTCTACTCAAGATTACACAATAGGCCATGCTCCTAATCAAGTACAAAATAGTGTGAAGAATTCTTCATCTGTGCTGGATACAAAAACTTTAGAAAGTATGCCTGCTTACTTACATGATACAGAGAAAACCATGAAGTGTGAAGCAATGGATTTTTTAATGCTCTTTCAATGTCCTGGGAAGAATTATTCACCTCATGTTGTTCATCAGAAAATGGCTGTTGATGTGGCCAAGCATGAGGGGCCTGAATTAAACAGTGATGGAAGTTCCATTTTACTTCAGTCAATGTCAAATATGACAAACGTGGAGCAGCAAAAATTTGTAGGGATGATACCTGTAAATGAGAGGAAGTTTGAAGGGAACAATAGTGGCTGTGAAGATACAAGTTTGGAATCAGGACAAAATGTTCCATCATTTTTACACAATTTGGTTATGGATAATAATGGTGTCAATGATCTAGTATGTCCGTCAGAAAATGTCGGAGTTGATTCTGTATCCTTCCCTTTAGACTTTCTTGATGCAGCTGTTTGTGAGAGTGATGAGTTTTATTATGTAGATATCAACCAAAAAGGGGTGTTGAATGTGCCCAGACCTTCAGATACAAACTCCCAAAAAAATACTGAGAAGTCAAAGTTTCAAACTGAACCTTGTTACAAGGATACCTCATACACATTGAAATTTCCTACTGGCTATGAGCTACATGAAGCACTTGGACCAAGTTTTATGAAAGGgagtaaatattttgattgggCAGCAGAGGCAAATCAAGATGTTAAAACTGCTGAGATGTCAGACGAGATTAGCTGTAGCCAATTGACTTCTGAATCTCGCCCAGAGCATCTTTTGGAAGCTATGGTGGCTAACATTTGCCATggtaataataatgttaatagtGAGTTATCATTTTCAACATCAATGCACGCTGCAATGGCCTCAGGAAGAAATCCTGAAGGTTCTATTCACACTGTGCACACTATTAATTCAGAAGGCTATTCAATAGATCAGCCCCTTCTTGTTAGAGAGGACAAACATCATAGTTTGAGTTCATCTGGGATATGTGGTGTAATATCCCCAAAGGGTTTTTCTTCTACATGTCCTAGTTCATGTAGTGAACAGTTTGAGAGGTCTTCTGAACCAACTAAGAACAGCAAGAAGAGGGCAAGGCCTGGGGAAAGTGGTAGGCCTAGGCCAAGGGACAGACAACTGATCCAAGATCGTATTAAGGAGTTGAGGGAACTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCGCTACTAGAGTGCACCATAAAACACATGCTCTTTCTTCAGAATATAACTAAGCATGCTGACAAGCTAAATAATTTTGCGGATACAAAGACAAAGTTGCATCACATGGAAAAAGACATTCCTGGATCATCTAGTTATCAACAGGGTTCAAGTTGGGCAATGGAAGTAGGAGGCCATCTGAAAGTTCGTTCAATATTTGTGgagaatattaataagaatggcCAGATGCTTGTTGAGATGCTGTGTGAGGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCATCACAAGCTTGGGCTGA 2148 0.3953 MAACNAGVIDNPFFRVSKSFDFVKEKKMGSNLHRLLRSFCLGTDWKYAIFWRLKHRARMILTWEDAYYDNPNSCDSSKNKSCQNTLEQIGGAGFLHDPLGLAVAKMSYHVYSLGEGIVGQVAVTGKHRWICVDNQVTSSGPSFEFADGWQSQFSAGIRTIVVVAVVPLGVVQLGSLNKVTEDMGIVSCIRSLFLSTQDYTIGHAPNQVQNSVKNSSSVLDTKTLESMPAYLHDTEKTMKCEAMDFLMLFQCPGKNYSPHVVHQKMAVDVAKHEGPELNSDGSSILLQSMSNMTNVEQQKFVGMIPVNERKFEGNNSGCEDTSLESGQNVPSFLHNLVMDNNGVNDLVCPSENVGVDSVSFPLDFLDAAVCESDEFYYVDINQKGVLNVPRPSDTNSQKNTEKSKFQTEPCYKDTSYTLKFPTGYELHEALGPSFMKGSKYFDWAAEANQDVKTAEMSDEISCSQLTSESRPEHLLEAMVANICHGNNNVNSELSFSTSMHAAMASGRNPEGSIHTVHTINSEGYSIDQPLLVREDKHHSLSSSGICGVISPKGFSSTCPSSCSEQFERSSEPTKNSKKRARPGESGRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQNITKHADKLNNFADTKTKLHHMEKDIPGSSSYQQGSSWAMEVGGHLKVRSIFVENINKNGQMLVEMLCEECSHFLEIAEAITSLG 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2210 715 MobiDBLite consensus disorder prediction 560 594 - -
Ssu7g2210 715 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 28 715 IPR043561 GO:0003700|GO:0006355
Ssu7g2210 715 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 32 193 IPR025610 -
Ssu7g2210 715 MobiDBLite consensus disorder prediction 570 594 - -
Ssu7g2210 715 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 28 715 - -
Ssu7g2210 715 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 580 629 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2210 Ssu-Chr7 43379651 43386095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2210 28 714 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 42.172 4.65e-147 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2210 - - gmx:100777740 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2210 7 43379651 43386095 Ssu7g2210 7 43379651 43386095 ECH
Ssu4g1242 4 19912306 19919067 Ssu7g2210 7 43379651 43386095 PCT