LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g2210	ATGGCAGCTTGCAATGCTGgTGTGATCGACAACCCCTTCTTTAGGGTGTcaaaaagttttgattttgtgaAGGAGAAGAAAATGGGTAGCAACTTGCACCGACTGCTCAGAAGCTTCTGTTTGGGTACTGATTGGAAGTATGCCATCTTTTGGAGGCTCAAACATCGGGCTCGGATGATCTTGACATGGGAGGATGCTTACTATGACAATCCTAATAGTTGTGACTCTTCCAAAAATAAGAGCTGCCAGAATACATTGGAACAGATTGGCGGTGCTGGTTTTTTGCATGATCCTCTAGGGTTAGCTGTGGCAAAGATGTCCTATCATGTATATTCGTTAGGGGAAGGAATTGTTGGACAGGTAGCTGTGACCGGAAAGCATCGGTGGATCTGTGTAGATAATCAAGTTACAAGTTCTGGCCCATCCTTCGAGTTTGCTGATGGGTGGCAATCTCAGTTTTCTGCCGGAATTAGGaccattgttgttgttgcggTAGTCCCCCTTGGAGTTGTTCAACTTGGCTCTTTAAATAAAGTTACTGAAGATATGGGCATTGTAAGCTGTATCCGGAGTCTCTTTTTGTCTACTCAAGATTACACAATAGGCCATGCTCCTAATCAAGTACAAAATAGTGTGAAGAATTCTTCATCTGTGCTGGATACAAAAACTTTAGAAAGTATGCCTGCTTACTTACATGATACAGAGAAAACCATGAAGTGTGAAGCAATGGATTTTTTAATGCTCTTTCAATGTCCTGGGAAGAATTATTCACCTCATGTTGTTCATCAGAAAATGGCTGTTGATGTGGCCAAGCATGAGGGGCCTGAATTAAACAGTGATGGAAGTTCCATTTTACTTCAGTCAATGTCAAATATGACAAACGTGGAGCAGCAAAAATTTGTAGGGATGATACCTGTAAATGAGAGGAAGTTTGAAGGGAACAATAGTGGCTGTGAAGATACAAGTTTGGAATCAGGACAAAATGTTCCATCATTTTTACACAATTTGGTTATGGATAATAATGGTGTCAATGATCTAGTATGTCCGTCAGAAAATGTCGGAGTTGATTCTGTATCCTTCCCTTTAGACTTTCTTGATGCAGCTGTTTGTGAGAGTGATGAGTTTTATTATGTAGATATCAACCAAAAAGGGGTGTTGAATGTGCCCAGACCTTCAGATACAAACTCCCAAAAAAATACTGAGAAGTCAAAGTTTCAAACTGAACCTTGTTACAAGGATACCTCATACACATTGAAATTTCCTACTGGCTATGAGCTACATGAAGCACTTGGACCAAGTTTTATGAAAGGgagtaaatattttgattgggCAGCAGAGGCAAATCAAGATGTTAAAACTGCTGAGATGTCAGACGAGATTAGCTGTAGCCAATTGACTTCTGAATCTCGCCCAGAGCATCTTTTGGAAGCTATGGTGGCTAACATTTGCCATggtaataataatgttaatagtGAGTTATCATTTTCAACATCAATGCACGCTGCAATGGCCTCAGGAAGAAATCCTGAAGGTTCTATTCACACTGTGCACACTATTAATTCAGAAGGCTATTCAATAGATCAGCCCCTTCTTGTTAGAGAGGACAAACATCATAGTTTGAGTTCATCTGGGATATGTGGTGTAATATCCCCAAAGGGTTTTTCTTCTACATGTCCTAGTTCATGTAGTGAACAGTTTGAGAGGTCTTCTGAACCAACTAAGAACAGCAAGAAGAGGGCAAGGCCTGGGGAAAGTGGTAGGCCTAGGCCAAGGGACAGACAACTGATCCAAGATCGTATTAAGGAGTTGAGGGAACTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCGCTACTAGAGTGCACCATAAAACACATGCTCTTTCTTCAGAATATAACTAAGCATGCTGACAAGCTAAATAATTTTGCGGATACAAAGACAAAGTTGCATCACATGGAAAAAGACATTCCTGGATCATCTAGTTATCAACAGGGTTCAAGTTGGGCAATGGAAGTAGGAGGCCATCTGAAAGTTCGTTCAATATTTGTGgagaatattaataagaatggcCAGATGCTTGTTGAGATGCTGTGTGAGGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCATCACAAGCTTGGGCTGA	2148	0.3953	MAACNAGVIDNPFFRVSKSFDFVKEKKMGSNLHRLLRSFCLGTDWKYAIFWRLKHRARMILTWEDAYYDNPNSCDSSKNKSCQNTLEQIGGAGFLHDPLGLAVAKMSYHVYSLGEGIVGQVAVTGKHRWICVDNQVTSSGPSFEFADGWQSQFSAGIRTIVVVAVVPLGVVQLGSLNKVTEDMGIVSCIRSLFLSTQDYTIGHAPNQVQNSVKNSSSVLDTKTLESMPAYLHDTEKTMKCEAMDFLMLFQCPGKNYSPHVVHQKMAVDVAKHEGPELNSDGSSILLQSMSNMTNVEQQKFVGMIPVNERKFEGNNSGCEDTSLESGQNVPSFLHNLVMDNNGVNDLVCPSENVGVDSVSFPLDFLDAAVCESDEFYYVDINQKGVLNVPRPSDTNSQKNTEKSKFQTEPCYKDTSYTLKFPTGYELHEALGPSFMKGSKYFDWAAEANQDVKTAEMSDEISCSQLTSESRPEHLLEAMVANICHGNNNVNSELSFSTSMHAAMASGRNPEGSIHTVHTINSEGYSIDQPLLVREDKHHSLSSSGICGVISPKGFSSTCPSSCSEQFERSSEPTKNSKKRARPGESGRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQNITKHADKLNNFADTKTKLHHMEKDIPGSSSYQQGSSWAMEVGGHLKVRSIFVENINKNGQMLVEMLCEECSHFLEIAEAITSLG	715

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g2210	715	MobiDBLite	consensus disorder prediction	560	594	-	-
	Ssu7g2210	715	PANTHER	TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED	28	715	IPR043561	GO:0003700\|GO:0006355
	Ssu7g2210	715	Pfam	bHLH-MYC and R2R3-MYB transcription factors N-terminal	32	193	IPR025610	-
	Ssu7g2210	715	MobiDBLite	consensus disorder prediction	570	594	-	-
	Ssu7g2210	715	PANTHER	BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN	28	715	-	-
	Ssu7g2210	715	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	580	629	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g2210	Ssu-Chr7	43379651	43386095	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g2210	28	714	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G31280	42.172	4.65e-147	444

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g2210	-		-	gmx:100777740	1180.62

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu7g2210	7	43379651	43386095	Ssu7g2210	7	43379651	43386095	ECH
	Ssu4g1242	4	19912306	19919067	Ssu7g2210	7	43379651	43386095	PCT

Showing 1 to 2 of 2 entries