Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2206 ATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCCTGAGAAGAAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAGCAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTTTCAAAGATCCTTGCTCACCTCCCTGTGAGTGACCGATGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTCTCCCATATTTTTTCACTCCAACAACAGGTGGTCAATTTACAAGCACAACTTGCTTGTCTCAAGGAACAAGCAGCTCAGAGTTGTCTCAATGCCTCTGTCAATGAAAACCctagtgaaaaattatttgaaaaatcttCTGCTGCTTTACCCCAGGATCTTCAAAGTTGGTTTCAGGTGGAAAATTCCAACCTGGGGCCAGAATTTCTTCCTAACTTGTGTACTAATTTATCCTCAGCAGCACAACATTATGGGAACAATGCTCTCATGGAAGATTTAAACCCTATTGggattaattatgaaaattcttCAGGAGCTATGGAAGAAAGCAGCTCCTTTTCGAGCTTTGATGAGAGTTCTAACTATTCCATGTCCTATGACATGCAAATGCAAACAAGCAGAAGGACGTGGGGTTTTCATGAAGTGGAGGACCTACATTCAGTGGCTTTTGGATACAGTACTCGATCACATTCATGA 726 0.4077 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKILAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFSLQQQVVNLQAQLACLKEQAAQSCLNASVNENPSEKLFEKSSAALPQDLQSWFQVENSNLGPEFLPNLCTNLSSAAQHYGNNALMEDLNPIGINYENSSGAMEESSSFSSFDESSNYSMSYDMQMQTSRRTWGFHEVEDLHSVAFGYSTRSHS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2206 241 Coils Coil 87 107 - -
Ssu7g2206 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 236 - -
Ssu7g2206 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 236 - -
Ssu7g2206 241 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Ssu7g2206 241 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2206 Ssu-Chr7 43304233 43305089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2206 7 142 AS2 family AT3G58190 71.014 2.79e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu7g2206 LOB 1.8e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2206 7 43304233 43305089 Ssu7g2206 7 43304233 43305089 ECH
Ssu4g1244 4 19975584 19982136 Ssu7g2206 7 43304233 43305089 PCT