Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2205 ATGGCTTCTGAAACTGGAAATGACACTGGCTCTGGCTCTGGCTTTGGATCTCCTTGTGGGGCATGCAAGTTCCTCCGAAGAAAGTGTGCAGCTGATTGCGTCTTTGCACCTTACTTTTGCTCCGAACAAGGAGCTGCTAGATTCGCAGCCATCCATAAGGTGTTCGGTGCTAGCAACGCTTCCAAGTTGCTCATGCGTTTACCTGCTCACCATCGGTTTGAGGCAATGGTCACAATTGCTTATGAAGCCCAAGCTCGCATCAGAGACCCTGTTTACGGTTGTGTCTCCCATATTTTTGCCTTGCAACAACAGGTAGCATGCTTGCAGGCTCAACTAATGCAAATGAAGGCACAACTGGATCAGAACCTGATGGAGTCCAGGAACTTGGAGAATCATTGGTCAGAGAATGTTGGACAACCATTCAATCCATTTTGTACCACTTCCATGAATAACCCTATATCTCCTAAGAGCTCACTTGATTCAATTGATTATAGCATCATCAATAATGGAATGCAAGATGTACAAAGCAGAGAGGATCTCTCATTCCAAGCTTGTTCTAAGAAAAAATCATATAACAATGACTTGGGTGAGCTGCAAGAATTGGCACTCAGGATGATGAGGAACTGCAACTAG 633 0.4502 MASETGNDTGSGSGFGSPCGACKFLRRKCAADCVFAPYFCSEQGAARFAAIHKVFGASNASKLLMRLPAHHRFEAMVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQMKAQLDQNLMESRNLENHWSENVGQPFNPFCTTSMNNPISPKSSLDSIDYSIINNGMQDVQSREDLSFQACSKKKSYNNDLGELQELALRMMRNCN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2205 210 Coils Coil 98 125 - -
Ssu7g2205 210 Pfam Lateral organ boundaries (LOB) domain 18 116 IPR004883 -
Ssu7g2205 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 11 207 - -
Ssu7g2205 210 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 207 - -
Ssu7g2205 210 ProSiteProfiles LOB domain profile. 17 119 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2205 Ssu-Chr7 43266254 43267879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2205 1 208 AS2 family AT2G42430 52.016 8.59e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu7g2205 LOB 6.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2205 K13944 - gmx:100776145 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2205 7 43266254 43267879 Ssu7g2205 7 43266254 43267879 ECH
Ssu4g1246 4 20012927 20014273 Ssu7g2205 7 43266254 43267879 PCT