Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2203 ATGAATGCTAGAAGAGACGGTCGTAACAACAAAGTCGCACTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCGTCTCTCTACTCCTCAACTTCTTCCCATGAAATTGATGAACATGATAATGAGCAAGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGATATACATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGGTATTTGAGACAAAATCCAGCAGAAGAATGTTTTCGCTTGTAGCATCCTTTGTTGtgctttttcttataatatattatctaactAGGTAA 381 0.3806 MNARRDGRNNKVALFDGIEEGGIRASSLYSSTSSHEIDEHDNEQALDGLQDRVNLLKRLSGDIHEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFSLVASFVVLFLIIYYLTR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2203 126 Gene3D - 44 107 - -
Ssu7g2203 126 CDD SNARE_Bet1 39 96 IPR039899 -
Ssu7g2203 126 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 36 98 IPR000727 -
Ssu7g2203 126 SUPERFAMILY SNARE fusion complex 32 98 - -
Ssu7g2203 126 PANTHER BET1-LIKE SNARE 1-1 1 126 - -
Ssu7g2203 126 PANTHER GOLGI SNARE BET1-RELATED 1 126 IPR039897 GO:0015031|GO:0030173
Ssu7g2203 126 SMART tSNARE_6 31 98 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2203 Ssu-Chr7 43211718 43214318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2203 37 125 SNARE and Associated Proteins AT1G28490 26.966 2.71e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2203 K08504 - gmx:100500329 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2203 7 43211718 43214318 Ssu4g1249 4 20037132 20040130 PCT