Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2202 ATGGAATTCAGCTACCAAGAAGACTCCAAAAGCTCCAGCGAAGAAATTGATCGATCATCCGAACAGAATGATGAGATGGGAACTGGCAGATCCTACGAGTGTGTGTTTTGCAAGAGGGGCTTCACTACTGCACAAGCTTTGGGTGGACACATGAACATACACAGAAAAGATAGAGCCAACAAGGCCAAACCCAATTTTCCTCCTTCGAGTTCAAGCAAGGTTGATGAGAATAACTATGCATCAGCAGATCTCGGGCTGTATTCACCATCTAATCCAAGCTATCTTACACGAGGGAATTGCTATTCCTCTCTTCCTGATCGAGAGGTAGACACTAATTACAATTACTGCCATCAATTATATTTTCCCTCACACGCATGTGGTGCCAGATCATCACCTTCACATGTACAGTATAGTGAGGTTTTGTGTGTAGAGAACCAAAGGGATCCTCAGCTTCTGTTTGGACAAGATTGGAGGCAAAAGGGTTTGAGTTTGTACACTAATCCATTACGTGTACATGAAAATAAAGACAAGATAGAAAACAACAATGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCATAG 594 0.4259 MEFSYQEDSKSSSEEIDRSSEQNDEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANKAKPNFPPSSSSKVDENNYASADLGLYSPSNPSYLTRGNCYSSLPDREVDTNYNYCHQLYFPSHACGARSSPSHVQYSEVLCVENQRDPQLLFGQDWRQKGLSLYTNPLRVHENKDKIENNNEEDDLDLELRLGHHP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2202 197 Gene3D Classic Zinc Finger 6 84 - -
Ssu7g2202 197 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 1 197 - -
Ssu7g2202 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Ssu7g2202 197 Pfam C2H2-type zinc finger 32 56 - -
Ssu7g2202 197 PANTHER OS07G0101800 PROTEIN 1 197 - -
Ssu7g2202 197 MobiDBLite consensus disorder prediction 57 76 - -
Ssu7g2202 197 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Ssu7g2202 197 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Ssu7g2202 197 MobiDBLite consensus disorder prediction 1 28 - -
Ssu7g2202 197 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2202 Ssu-Chr7 43201474 43202067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2202 32 95 C2H2 Transcription Factor Family AT5G43540 53.846 4.87e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2202 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2202 - - ccaj:109812060 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2202 7 43201474 43202067 Ssu7g2202 7 43201474 43202067 ECH
Ssu4g1250 4 20051769 20052305 Ssu7g2202 7 43201474 43202067 PCT