Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2201 ATGAAAGTTAGCCCAGACTCCAGAGCACAGAGTGGGCATCtttgtttctcattttttctcttctctacgTGTTTGGGTCCACAACGTGAACGTCTTGCTCTTGTGTCTCTGTTTCTCTCTTCCATGAAGGCTGTGACCTACAGTCCTGCATTCGAGCTACAGGCAGTGGCAGATGAAGTACACCTGCAGATAGAAATCTTCACTTTCTGCCTCAGAGTACATGATGTTAAGCTTCAATATGAAGTTATTCTTGGATCACTTCCTCTCACTCGCTCAACTGTGAAGTCTCCAAAGTTCTCTTGTTACAGATTTGGACCgaaaaatacaatacaaaaaaaaagcacCATGGAAGGAAACTATCTGAACAGAAACACTCCACAGAGAGAGGATAGCTTTGGCTTTGAGGAACATACATGGGGAACTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGGTCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAACCTAACCCTAGCACTAAGCCTAACCCAACTCTTCCTCCACCCTCTTCTTCATCATCTCCTTTATCTGATGAGCCTTTAAACTATGCACATCCTTCTCCACTTTGTAGTCCTTGTCTCACTTTGTCTTCTTCGCCCTCTCCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCAGTCCTTCTCAGTTTCCTCTTTTGGGTCCTCAAAGCAAGGAAATTAAGATGAGTAAGGAAATGAAGGGCATTGTAGAGGAGGAGGAACACAAGGGTTTCAAGAATAATGAGCAAAACATTACGTTGGAGTTAGGAATAGGGTTGCTTAAAAACCAAGAGGAGAATTTAGATTTGGAACTTCGACTCGGGAATTTCTAG 942 0.4161 MKVSPDSRAQSGHLCFSFFLFSTCLGPQRERLALVSLFLSSMKAVTYSPAFELQAVADEVHLQIEIFTFCLRVHDVKLQYEVILGSLPLTRSTVKSPKFSCYRFGPKNTIQKKSTMEGNYLNRNTPQREDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNPTLPPPSSSSSPLSDEPLNYAHPSPLCSPCLTLSSSPSPASTSGDKKPRLSPSQFPLLGPQSKEIKMSKEMKGIVEEEEHKGFKNNEQNITLELGIGLLKNQEENLDLELRLGNF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2201 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Ssu7g2201 313 PANTHER OS07G0101800 PROTEIN 117 312 - -
Ssu7g2201 313 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 117 312 - -
Ssu7g2201 313 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Ssu7g2201 313 MobiDBLite consensus disorder prediction 230 260 - -
Ssu7g2201 313 Pfam C2H2-type zinc finger 148 172 - -
Ssu7g2201 313 Gene3D Classic Zinc Finger 134 190 - -
Ssu7g2201 313 MobiDBLite consensus disorder prediction 230 247 - -
Ssu7g2201 313 SUPERFAMILY beta-beta-alpha zinc fingers 145 174 IPR036236 -
Ssu7g2201 313 MobiDBLite consensus disorder prediction 192 209 - -
Ssu7g2201 313 SMART c2h2final6 148 170 IPR013087 -
Ssu7g2201 313 MobiDBLite consensus disorder prediction 181 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2201 Ssu-Chr7 43186581 43192999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2201 136 311 C2H2 Transcription Factor Family AT3G23130 42.051 6.88e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2201 zf-C2H2_6 9.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2201 - - gmx:102662947 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1251 4 20083773 20084408 Ssu7g2201 7 43186581 43192999 PCT