LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g2199	ATGGTTGGTACCCGCGAAGTCCATGCGGCGAGGAGAGGAGAGGGAAGAGTGCGAGGCACAAGAATGTCCACAAGCATGGCGATTTTGCAGGGCCTTGGTTGGGACATTTCCATTTTCGCTGTCACAAACCCCACCATCACTTCACCATTCGCGCAACACAAAGACGAACAAAACTCCTGCGttcctcctcttctcttctcttctcatctCGTTCTCCCGCAATCGTTTTCTCGCAACCATTTCCGATCTGTCATGCACGTTGAAAACGTGCGCTCCGTCGAGTTGAAGTTCGATCGACTCCATTGGAAAATGTGCGCGCCTGGTGCTCTTGGCCTACTCGGATCTTTGTTAGCTAGGCATGGGATTCCAGAAAACATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAACTAGTTTGGATTGATGGACTTGTACTGAATATTAATGGAGAAGAAGCTGAAATTCAAACTAGTGATGAGAAGAAGGTTGTTTCCCGTTTGTCAAAATTATATCCCAAGGATATGGATGCACCTACTGACGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGGAAACTAGATACatgatgaatgaaatatatGCTTATACCGGAAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACACCTCTATGATACTAATGTGATGCAAAGATACAAGGGAGCAACAATTGGAGACTTGAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATCGGGCAATGATTACTGAGGAGAAAAGCAACTCTATTTTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATTTTTGGGTGGTCACACTGCATCTGAAGGACGAACTGTTGAACAACAAGTTCTAGAATCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTGATAAGTATGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAGATCATTTCACTACCTTAATCAATCCAATTGCTACGAATTAGTTGGTGTTAATGCGGCTCAAGAGTATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCTATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCAGAAGACACTGATTCATCGGTTCTAGAAGATGAAGAATCCAAGTTTCATCTCCAAACAACAGCAGAACTTCTCATGTGTGATCCTAATGCTTTGGAAGGTGCACTCCGTGAGCGTGTGATGATTACCCCAGAAGAAATCATCAAAAGAAGTCTTGATCCTCTTGGTGCTACAGTTAGCAGGGATGGTTTAGCCAAAACACTGTATTCTAGTTTATTTGACTGGTTAGTCCGTAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACGAATAGTTTTGAACAGTTTTGTAtaaatttcacaaatgaaaagctgCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGGATTGACTGGAGTTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCAGGAGGAATCATCGCTCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCAACTCATGAAACATTTTCACAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGACACGCTCAGACTTCACTGTTGTTCATTATGCAGGGGAGGTTCAATATCAATCTGAGCATTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGCTTCGCAATGTTCATTTGTATCAGGCCTTTTCCCTCCACTTTCTGAGGAAACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTCAAGCTACAATTACAACAATTGATGGATACACTCAATCTGACAGAGCCACACTATATTAGATGTGTGAAGCCAAATAATCTATTAAAACCTTGcttatttgaaaatatgaatgtCATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCATTGGGCCTTTCATgattttttaactcgattaggCATTCTTGCTCCGGAGGTTCTTCAAGGGAACTTCGATGAAAAGGATTCATGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGAAAAACTACCTTCCATCCATTCATGATGTTATCTCTGTGGGTCCTGTGTTGATTTTCCCTTCTAGCTCTTTTGGATCAATCTGA	2574	0.3947	MVGTREVHAARRGEGRVRGTRMSTSMAILQGLGWDISIFAVTNPTITSPFAQHKDEQNSCVPPLLFSSHLVLPQSFSRNHFRSVMHVENVRSVELKFDRLHWKMCAPGALGLLGSLLARHGIPENIVVGSHVWVGDPELVWIDGLVLNINGEEAEIQTSDEKKVVSRLSKLYPKDMDAPTDGVDDMTKLAYLHEPGVLHNLETRYMMNEIYAYTGNILIAINPFQSLSHLYDTNVMQRYKGATIGDLSPHVFAIAEAAYRAMITEEKSNSILVSGESGAGKTETTKMLMQYLAFLGGHTASEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELVGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEDTDSSVLEDEESKFHLQTTAELLMCDPNALEGALRERVMITPEEIIKRSLDPLGATVSRDGLAKTLYSSLFDWLVRKINISIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLTRSDFTVVHYAGEVQYQSEHFLDKNKDYVVPEHQDMLSASQCSFVSGLFPPLSEETAKSAKFSSIGSRFKLQLQQLMDTLNLTEPHYIRCVKPNNLLKPCLFENMNVIQQLRSGGVLEAVRIKCAGFPTHWAFHDFLTRLGILAPEVLQGNFDEKDSCKKILEKIGLTGYQKNYLPSIHDVISVGPVLIFPSSSFGSI	857

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g2199	857	PANTHER	MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN	124	830	-	-
	Ssu7g2199	857	CDD	MYSc_Myo11	195	830	IPR036018	-
	Ssu7g2199	857	PANTHER	MYOSIN	124	830	-	-
	Ssu7g2199	857	Pfam	Myosin head (motor domain)	183	826	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	ProSiteProfiles	Myosin motor domain profile.	181	857	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	Gene3D	-	785	834	-	-
	Ssu7g2199	857	PRINTS	Myosin heavy chain signature	211	230	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	PRINTS	Myosin heavy chain signature	601	629	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	PRINTS	Myosin heavy chain signature	315	342	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	PRINTS	Myosin heavy chain signature	268	293	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	PRINTS	Myosin heavy chain signature	548	576	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	Gene3D	Myosin VI head, motor domain, U50 subdomain	431	720	-	-
	Ssu7g2199	857	Pfam	Myosin N-terminal SH3-like domain	129	165	IPR004009	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	SMART	MYSc_2a	175	840	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	ProSiteProfiles	Myosin N-terminal SH3-like domain profile.	127	176	IPR004009	GO:0003774\|GO:0005524\|GO:0016459
	Ssu7g2199	857	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	828	IPR027417	-
	Ssu7g2199	857	Gene3D	-	371	429	-	-
	Ssu7g2199	857	Gene3D	-	558	742	-	-
	Ssu7g2199	857	Gene3D	Kinesin motor domain	184	781	IPR036961	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g2199	Ssu-Chr7	43144527	43157077	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g2199	121	830	Myosins gene family	AT1G08730	77.887	0.0	1196

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g2199	K10357		-	gmx:100803485	1383.62

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu7g2199	7	43144527	43157077	Ssu7g2199	7	43144527	43157077	ECH