Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2197 ATGATGGGTGAGAAGTTTTGTGTGAACGAAGAAGACAAGGGTGTGTTGGAATCTGTCTTGGGTGCAGAGGCTGTTGCGTTCTTTATTTCAGCACTTTCCAATAATGTCTTTTCCGGCGTGGTTGCTCCGTCAGCCAGTGCCGACCTGGCTCTCCGCCATCGGTTGTGCCAGCTTGTTGAGGCTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGGCTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGATGGGCATTGCAGTGATCCCAAAGGGGGGAGGAATTCAGTTGGAAAGGAGGATGACCAGGAGGTGAGAAAGAAGGTGCTGCAGAAGCTTGATGCTTGCTTTGCTGGGTCTGTGTCAAAAGAGGCTAATTATGCAAGGTTGGATAGGGTGTCTGATTCGCTCATGTTTTACTTAGTCTCGATGTGTTATATATTTGGTTTTGATTCGCCGTGTGGCCCTGGCAGTTCGTTCAAGTCTGGTAAAGTGATTTGGGCTTCTGATGCTGCTGGTTGTTTAAACCAATTAGAATCTAGATCATTTCTGGGGAAATTGGCTGGTCTTCAAACTGTTCTTTTTGTTCCTCTGAAATCCGGGGTGGTGGAGCTTGGTTCACTTGAAATGGTGCCTGAAGAGCAGGGTGTTGTGGAGATGGTCAGGACAGTGTTTGGGGAATCCAGTCCCGGACAGGCAAAGGTGTGTCCGAAGATTTTTGGGCATGAGTTAAGCCTGGGGGATACAAAATCTCAATCCATAACTATTAGTTTTTCCCCAAAGGTGGAGGATGATCCTGGTTTTACCTCAGACTCCTATGAAGTTCAAGCACTAGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGGACTTTAGGTGACAGTAATGAAGGGAAAATGTTCCCTCAATTGAATCAAATGATGGGTGGGAGTTTTAATGCTCAAGCAAGGGGTCCTTGTCTAGATCTCGGTAATGAAGACTCATCCTCAATCCATGCAGATGAGCGGAAGCCCAGAAAAAGAGGTAGGAAGCCTGCCAATGGGAGAGAGGAACCACTGAACCATGTTGAAGCAGAGAGACAAAGACGCGAGAAACTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTCCCTAATATATCTAAAATGGACAAGGCATCTTTACTTGGTGATGCCATTACCTTTATCACTGATCTCCAGATGAAGATCAAGGTGTTGGAAGCTGAGAAGAACATGATTAacaataaggaccaaaagttgTCGCTGCCAGATATGGATTTTCAGGATAGAGAGGATGACACAGTTGTGACAGTGAGGTGCCCCTCCGATATTCACCCTGTTTCTGGTGTGGTTAAAACGTTCAGGGAGCATCAAATTGTGGCTCAAGACTCCAGTGTTTCAACTACAGATGATAAAGTAATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCTATCCAGTTGAAAGAAAAGCTTGAAGCATCCCTATCCAAAAATTGA 1515 0.4515 MMGEKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSGVVAPSASADLALRHRLCQLVEASKWNYAVFWQVAGLKSGGSALIWGDGHCSDPKGGRNSVGKEDDQEVRKKVLQKLDACFAGSVSKEANYARLDRVSDSLMFYLVSMCYIFGFDSPCGPGSSFKSGKVIWASDAAGCLNQLESRSFLGKLAGLQTVLFVPLKSGVVELGSLEMVPEEQGVVEMVRTVFGESSPGQAKVCPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGDSNEGKMFPQLNQMMGGSFNAQARGPCLDLGNEDSSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQKLSLPDMDFQDREDDTVVTVRCPSDIHPVSGVVKTFREHQIVAQDSSVSTTDDKVIHTFSIRTEGGEAAAIQLKEKLEASLSKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2197 504 Gene3D - 345 418 IPR036638 GO:0046983
Ssu7g2197 504 SMART finulus 358 407 IPR011598 GO:0046983
Ssu7g2197 504 PANTHER MYC 2 503 IPR045084 GO:0003700|GO:0006355
Ssu7g2197 504 MobiDBLite consensus disorder prediction 287 306 - -
Ssu7g2197 504 MobiDBLite consensus disorder prediction 330 363 - -
Ssu7g2197 504 CDD ACT_UUR-ACR-like 436 503 - -
Ssu7g2197 504 Coils Coil 398 418 - -
Ssu7g2197 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 420 IPR036638 GO:0046983
Ssu7g2197 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Ssu7g2197 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Ssu7g2197 504 MobiDBLite consensus disorder prediction 317 363 - -
Ssu7g2197 504 PANTHER TRANSCRIPTION FACTOR BHLH3 2 503 - -
Ssu7g2197 504 CDD bHLH_AtAIB_like 349 427 - -
Ssu7g2197 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2197 Ssu-Chr7 43093499 43095013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2197 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.431 5.48e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g2197 bHLH-MYC_N 1.6e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2197 - - gmx:100782107 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2197 7 43093499 43095013 Ssu7g2197 7 43093499 43095013 ECH