Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2191 ATGAGAGACATATTTGAGAAGCAACCATCTCCTGATTCTTCAACTTATGCATCAAGCAGTGGCCTCTCTGGTGATGATAAGGAGATTGGGTATAGAGCAGCAACATCAAAGCATAAATATCTTTTGGCCAACAACTCTGCTCTCAACTTCTTACCCATCAAAATTGACCCTAATTTTGCTCGCATGGTGATGGCAGAGATGGTGGGtacttttattttgatgttcTGTGTATGTGGAATCACTGCAaacacacaattccaaaatggTGCAGTGGGCCTTCTGGAGTATGCAGCTACAGCAGGATTAACAGTGGTAGTGATAATTTTCTCTATAGGGCCAATATCTTATGCGCACGTTAACCCAGCTGTCACAATAGCCTTTGCAACAATCGATCAATTTCCATGGTTCAAGGTTCCAGTTTACATAATAGCGCAGACAGTAGGTTCTATGTCGGCAACATACATAGGTAGCCTTGTATACGGCATAAAATCAGATGCTATGATGACCATGCCACTCCAAGGGCGCAACTCTGCCTTCTGGGTGGAGGTTATTGCAACTTTCATCATCATGTTCCTCATTGCAGCTTTGACATCTGAATCTCAATCAGTGGGCCATTTATCTGGCTTCGTTGCTGGAATAGCAATTGGGCTTGCTGTACTAATCACAGGGCCGGTTTCAGGTGGATCAGTGAATCCTGCCAGATCATTAGGTCCAGCAATTCTCTCATGGAAATTTAAGGACATATGGATATACATGGTAGCCCCCATTGGTGGAGCTGTAGCAGGAGCCTTAATGTTTCGTTTCCTACGCCTTCCAGACCAACATTCTAGTACTTTGTCCTCCCCAAACATCAGTGATGTTGGTCGTCCCATACCCTTTTGCTCAAgGAGAAGTGGGCCCATGATTTTGCCGGTGGATAAAAATTGGAGTTTGTTCTCTGAAAGAGTAGAAGGGTTCAGACAAAGATATCTCTTAAGAACAAAAGGAACATCAGATGGTGTTTATCATAAGTTGCCCCTGTAA 1023 0.4233 MRDIFEKQPSPDSSTYASSSGLSGDDKEIGYRAATSKHKYLLANNSALNFLPIKIDPNFARMVMAEMVGTFILMFCVCGITANTQFQNGAVGLLEYAATAGLTVVVIIFSIGPISYAHVNPAVTIAFATIDQFPWFKVPVYIIAQTVGSMSATYIGSLVYGIKSDAMMTMPLQGRNSAFWVEVIATFIIMFLIAALTSESQSVGHLSGFVAGIAIGLAVLITGPVSGGSVNPARSLGPAILSWKFKDIWIYMVAPIGGAVAGALMFRFLRLPDQHSSTLSSPNISDVGRPIPFCSRRSGPMILPVDKNWSLFSERVEGFRQRYLLRTKGTSDGVYHKLPL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2191 340 ProSitePatterns MIP family signature. 118 126 IPR022357 -
Ssu7g2191 340 SUPERFAMILY Aquaporin-like 57 275 IPR023271 -
Ssu7g2191 340 Pfam Major intrinsic protein 58 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2191 340 Gene3D Glycerol uptake facilitator protein. 26 280 IPR023271 -
Ssu7g2191 340 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2191 340 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2191 340 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2191 340 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2191 340 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2191 340 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2191 340 PANTHER AQUAPORIN NIP2-1 9 292 IPR034294 -
Ssu7g2191 340 MobiDBLite consensus disorder prediction 8 22 - -
Ssu7g2191 340 MobiDBLite consensus disorder prediction 1 23 - -
Ssu7g2191 340 PANTHER AQUAPORIN NIP7-1-RELATED 9 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2191 Ssu-Chr7 42952828 42955239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2191 57 277 Major Intrinsic Protein MIP AT1G80760 41.704 1.04e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2191 K09874 - mtr:MTR_1g070385 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2191 7 42952828 42955239 Ssu7g2191 7 42952828 42955239 ECH