Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2181 ATGACGATGAAGCGGTTGGTGAGAGTGAAGAGGGACGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTGATCAAAGATGCCACTGCCATTTCTCTGTGCCTTCACACGTTCTGCAGGAAGtgcatttatgataaaattacaGTTGAAGAATTGGAAAACTGTCCGGTGTGCAACATTGATTTGGGCATTATTCCGCTTGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCtttcaataaaagaaaggagaaggCACCTGTAGCTGTCCCTTCAGTACCATTACCACCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCTACACAGTCAACCATAACAGGAAGAAGAACAAAAGCTACAAGAAAGGCTAGTGGCCTGCAGGGCTCTAGTTTCTCCATTGAAAAGCTcataaagaaagaagaggaattACTGGAAGATCACCAAGATGGTTCATACTCACCTGACACTTCAAACAAGTCTGCTAAGAATGCTGGACAGAGTTTGTCACTTTGTAAAAACAACCAATCCATCTACAATAGAGGACCACAGAATGGTGCTGAACCACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGTCTTTTAAGTCTAATGTGCAAGCGTCTGATGCTAAACTAGAATCCATGAAAGTGACTGACAGTGATACTAAAGTGAAGAAAGccaaaattaaggaaaataagcGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGATCATGTCTCTTCAGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCTAAAAAAGGAACCTGTTTTTGGAGAATCAAGAATATCACCTCAGGCTGTTCTGGATGCTACCGACAGTAATCTCTCATggaattattcaatttggttctCCTTAGCAGCTTCTGAAAATCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGAAGCATACCGGTctcatatattcaaaaattattaatgaagaaACTAGGCCTGAAAAGTGAGAATGAGGTTGAGATTAAATGCATGGGACATCCGGTGCTTCCTTCACTGCAGGTACAAAATTTGGTTGAATTTTGGCTTGATACGGCATCTACAGGACACAGAATTCCTGCAACCATTGGATCCTCGGGGAAAGATTTTGTCATGATCCTAACCTACAGTCGGAAGGTCCTAAACCCTTGA 1290 0.3845 MTMKRLVRVKRDAIAACMTCPLCNKLIKDATAISLCLHTFCRKCIYDKITVEELENCPVCNIDLGIIPLEKMRPDNSLQDLRNKIFPFNKRKEKAPVAVPSVPLPPRRKERSLSSLVVSTPRVSTQSTITGRRTKATRKASGLQGSSFSIEKLIKKEEELLEDHQDGSYSPDTSNKSAKNAGQSLSLCKNNQSIYNRGPQNGAEPQEAKWDLWKTLNYLAEAASRSKSFKSNVQASDAKLESMKVTDSDTKVKKAKIKENKRKAKVEDEKISTDHVSSDTAKPNKLRRVRLKKEPVFGESRISPQAVLDATDSNLSWNYSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSYIQKLLMKKLGLKSENEVEIKCMGHPVLPSLQVQNLVEFWLDTASTGHRIPATIGSSGKDFVMILTYSRKVLNP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2181 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 - -
Ssu7g2181 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 IPR044807 GO:0004842
Ssu7g2181 429 MobiDBLite consensus disorder prediction 162 182 - -
Ssu7g2181 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Ssu7g2181 429 MobiDBLite consensus disorder prediction 124 143 - -
Ssu7g2181 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 100 IPR013083 -
Ssu7g2181 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Ssu7g2181 429 SMART ring_2 20 60 IPR001841 -
Ssu7g2181 429 SUPERFAMILY RING/U-box 15 86 - -
Ssu7g2181 429 MobiDBLite consensus disorder prediction 167 182 - -
Ssu7g2181 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2181 Ssu-Chr7 42799727 42804613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2181 1 348 C3H Transcription Factor Family AT2G30580 49.858 2.21e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2181 K16277 - gmx:100778462 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2181 7 42799727 42804613 Ssu7g1604 7 33566905 33572275 ECH
Ssu7g2181 7 42799727 42804613 Ssu7g2181 7 42799727 42804613 ECH
Ssu4g1262 4 20542827 20547948 Ssu7g2181 7 42799727 42804613 PCT