Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2173 ATGGAAGTTGGcctgaagaaggagaagatggCGTTTGAGGAAACTGAGCTCAGGCTGGGACTGCCTGGAAATGGAGCCACAGCAACTGAAGCAGCAGAAGGACTGAGGAAGAGAGGTTTCTCTGAAACTGAGACTGAAACAACCACCGTTGATTTGATGCTTAACCTCTCCCCAAGGaagctgctgctgctgctgctgatgGAGCAGATCCACGTGATAAGCCAAAGACTTCGCCTAAGGAGAAGACCCTTTTGCTTCCCGATCCCGCCAAGCCTCCTGCTAATTTCATTATATAATTCCATCCCCAACCCCTCAAAATATGAAGTGACTATACAGGCGCAAGTGGTGGGATGGCCACCCGTGCGGTCTTTCCGGAAGAACATGTTTGCAGCCCAAAAGATCAGCGGAGAGGAAAGCGAGAAGAACAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTCACCattgGAAATTGTGAATCCCAAGGCTTTAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTATGTCCCGACCTATGAAGACAGGGATGGCGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGGCTGGCACCAAGAGCCGTGGAGAAATGTAAGAACAGGAGCTAG 795 0.4541 MEVGLKKEKMAFEETELRLGLPGNGATATEAAEGLRKRGFSETETETTTVDLMLNLSPRKLLLLLLMEQIHVISQRLRLRRRPFCFPIPPSLLLISLYNSIPNPSKYEVTIQAQVVGWPPVRSFRKNMFAAQKISGEESEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2173 264 Pfam AUX/IAA family 14 255 IPR033389 -
Ssu7g2173 264 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 257 IPR003311 GO:0005634|GO:0006355
Ssu7g2173 264 ProSiteProfiles PB1 domain profile. 146 246 IPR000270 GO:0005515
Ssu7g2173 264 SUPERFAMILY CAD & PB1 domains 140 245 - -
Ssu7g2173 264 Gene3D - 140 258 - -
Ssu7g2173 264 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2173 Ssu-Chr7 42714875 42717672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2173 135 249 B3 DNA Binding Superfamily AT3G61830 33.913 2.79e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ssu7g2173 AUX_IAA 3.2e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2173 K14484 - gmx:100780214 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2173 7 42714875 42717672 Ssu4g0255 4 4141532 4148142 ECH
Ssu7g2173 7 42714875 42717672 Ssu7g2173 7 42714875 42717672 ECH