Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2172 ATGGAGAATTCATTGGGAAACTACGAAAAAGAGCTTAATCTCGAGGCCACGGAGTTGAGGTTGGGGTTGCCCGGAAGCGATGAGCCGGAGAAACGTTTTGCTGTAAGAAGCAACAAGAGATCTTCACCAGAAGCAAGTGAGGAAGAGTCCATAAGCAAGACCAACATGAATTCTAATGGTTCTGATGTCACAAGTGATGAACAAGACAACGTTGTGCCACCTGCAAAGGCTCTAGTAGTGGGATGGCCACCGGTTCGATCTTATAGGAAGAATAGTCTAcaacaaaagaaaggagaacAGGGTGAAGGGGCTGGGATGTACGTGAAAGTTAGTATGGCAGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAAAATATGCTCGAGTGCACATTTGGTGAATATTCGGAAAGGGAAGGCTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGACGTTCCATGGCACATGTTCGTGTCATCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGTTTGGGTtgtttttga 606 0.4422 MENSLGNYEKELNLEATELRLGLPGSDEPEKRFAVRSNKRSSPEASEEESISKTNMNSNGSDVTSDEQDNVVPPAKALVVGWPPVRSYRKNSLQQKKGEQGEGAGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMLECTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFVSSCKRLRIMKGSEAKGLGCF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2172 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 199 IPR003311 GO:0005634|GO:0006355
Ssu7g2172 201 ProSiteProfiles PB1 domain profile. 105 192 IPR000270 GO:0005515
Ssu7g2172 201 Gene3D - 100 201 - -
Ssu7g2172 201 MobiDBLite consensus disorder prediction 24 47 - -
Ssu7g2172 201 PANTHER AUXIN-INDUCED PROTEIN 2 199 - -
Ssu7g2172 201 SUPERFAMILY CAD & PB1 domains 101 191 - -
Ssu7g2172 201 MobiDBLite consensus disorder prediction 19 72 - -
Ssu7g2172 201 Pfam AUX/IAA family 17 199 IPR033389 -
Ssu7g2172 201 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2172 Ssu-Chr7 42684565 42685540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2172 60 198 B3 DNA Binding Superfamily AT2G46530 32.414 1.74e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu7g2172 AUX_IAA 2e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2172 K14484 - gmx:100780752 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2172 7 42684565 42685540 Ssu7g2172 7 42684565 42685540 ECH
Ssu4g1270 4 20693741 20694518 Ssu7g2172 7 42684565 42685540 PCT