Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2170 ATGGCGAATCACCCTTCCGAAGCTCCCACCGACGACTTCCTCGAGCAAATCCTGGGCCTCCCGACCTTCGCTTCCGCCGACCCCGCCTTGGCCGCCACCGATGCCTCTCCGATGATGCTCCAGCTCAACTCCGCCGACGCCGCCACCCACCTCGCCGCCGGAGCCGCCTTCCACGCGCCGCCCTACCAGTTGGGCCTCAGCCTGGAGCAAGGTAAGGAAGGCTTCCTTAAGCCCGAGGATGCTTCTGGAAGCGGCAAGCGCTTCCGCGACGACCTTCTTGATACCAGGCCTAAGAATGTATTTCATGGGCAACCCATGCCTACTACTGTTCCTACTGCTCCACATCCACCAGCAGTGCGACCTAGAGTGCGGGCCAGAAGAGGACAGGCTACAGATCCACACAGTATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCAGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTCAACAAGACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCTGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTTGAGGAAGAAGGCAGTGAGGGAAGAAACCAGCCAGCTTGGGAGAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCCGTCTCACTGGCATCAGCAATATACCAGTCACAACCATCAGACACCTCTAGTATAGTTAAGCCTGAAACTAATCCTCCTTCATAG 855 0.5357 MANHPSEAPTDDFLEQILGLPTFASADPALAATDASPMMLQLNSADAATHLAAGAAFHAPPYQLGLSLEQGKEGFLKPEDASGSGKRFRDDLLDTRPKNVFHGQPMPTTVPTAPHPPAVRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPVSLASAIYQSQPSDTSSIVKPETNPPS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2170 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Ssu7g2170 284 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 273 - -
Ssu7g2170 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 188 IPR036638 GO:0046983
Ssu7g2170 284 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 273 - -
Ssu7g2170 284 SMART finulus 135 184 IPR011598 GO:0046983
Ssu7g2170 284 Gene3D - 124 186 IPR036638 GO:0046983
Ssu7g2170 284 MobiDBLite consensus disorder prediction 96 119 - -
Ssu7g2170 284 Pfam Helix-loop-helix DNA-binding domain 134 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2170 Ssu-Chr7 42644215 42648189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2170 57 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 79.149 1.33e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g2170 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2170 - - gmx:100793177 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2170 7 42644215 42648189 Ssu7g1611 7 33673063 33678282 ECH
Ssu7g2170 7 42644215 42648189 Ssu7g2170 7 42644215 42648189 ECH