Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2162 atGTGGCGAAATTACATTACAGACCAAGCGGCGGAGTCAGAAGATGATATGTGGAGTGCAGCTTTGTGCAGCAGCGAGGAGGCAGCATCGGAGGATTGTGATTTCGTTTACGTGTCGGAGGTCCTGCGTGCTTGCACTTATTTGCCGGAAGATAGCGACATTTTCCTTTTACTGGAGAAGCAGCAGTGTTTGAAGGGGAAGGATACCTCGAAGGCTTCGACGCTGCAGAGACGGTTGATTTTCGACACTCTCCAGGAAATCCTGAACCGAAACCAGCAGTTGCCGCCGTGGAAGGCGGTGTCGTGCGGGGAGCAGAGGCAGCAGATCTGGTCGGAGTTTCGGAGGATCCGAGAGAGGGAAGAATCGGAGTCGGAGGACTTGTTTAAGGTGATATGCGGGGTGTTGAGGAAGGACATGGCGGAGGAGATGCGTGGGTGGGGAGAATGGCCGCTGGAGATGGGAGATCTCGTCTTAGACATTGAACGTCTCGTGTTTAAAGATCTCGTTGGCGAAACAATTCGAGAACTCGCCTCATTTTCCCCTCAATGTAGCAGGCTACCCGTGCTTCGTAGGAAACTCGTCTTTTGA 588 0.5272 MWRNYITDQAAESEDDMWSAALCSSEEAASEDCDFVYVSEVLRACTYLPEDSDIFLLLEKQQCLKGKDTSKASTLQRRLIFDTLQEILNRNQQLPPWKAVSCGEQRQQIWSEFRRIREREESESEDLFKVICGVLRKDMAEEMRGWGEWPLEMGDLVLDIERLVFKDLVGETIRELASFSPQCSRLPVLRRKLVF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2162 195 Pfam Domain of unknown function (DUF4378) 34 171 IPR025486 -
Ssu7g2162 195 PANTHER LONGIFOLIA PROTEIN 7 195 IPR033334 GO:0051513
Ssu7g2162 195 PANTHER OS11G0587300 PROTEIN 7 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2162 Ssu-Chr7 42476682 42477269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2162 8 195 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 46.842 2.88e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2162 - - gmx:100777397 340.117