Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2161 atgacgaCGGGTATCGTACGCGACCAGAACCTGGAGAAACACATCCACAAGCAGATGGGGTGCATGGCGGGGTTCCTCCAGATCTTCGATCGCCAACAGATACTCACCGGAAAACGCATCTACTCCCCCAAACGCCTCCCTCCGGCCTCGCCGGAGCCGGAGAAACCCACCGCCTCTCCGGTTCGAGAGGTCCAATCCGAGGACAAGGCAAGCGTCCCCATCCCCATCCCGGCCCTCCCTGCTCTGGAATTCAAAGAAGGCACGCGGTCTTCGTGGAAGTTCTCCAGAGAGGCCCCGAGGCTGTCCCTCGACAGCAGAGCCGTCGTGGACGCGAAAGGAAGCCTCCACCTTCAGCCCCGCGAGATCCCCCCCGAAAACGACGGAGACAAACAGCGTCGTTCCACCAGCGTCATTGCCAAGCTCATGGGCCTCGAGCCCTTACCGGATTCGGACCCCGGGCCCGTCGCCAAGCTCCAGAGATCCGCGTCCGAGTCCAGAGTCTCCCGAGATCTGCCTCTGCCGCTGCCGCAGTGCCGTTTCTTCGACCCCAACAATTTCCCAAGCGCTGCTCACGGGACCAATGTGGTCCGCGACAATAACAATAATGCCGCCGTGGACACCCGATTGCCCAATGGCAGGCCCGCCGCGGATCCACCCCGGCAGAGGGCCACGAAGAGTTTCTACGACTCCGCTGATTTCTTCCCCGAGCCCAAACACACCGTCTCGGTCTACGGAGAGATTGAGCGGAGGTTGAGGATGCGCGGGATTAACGAGCCTTCCAAGGATCTCCACACGCTCAAGCACATTCTAGAGGCGTTGCAGCTCAAGGGACTGCTACATTCCAACAACAAACCCAACCAGTCTCCCATTGTTGTCATGAAACCGGTCCGATCCGTGAACGATTCTCCTCCCCCGCCGTCGAGCCTCCGGTCCAGTCCTCGCCGGAGCCCGAGAGTTGGGAGCGAGACACGGAGGAGTGACCGGAATGTGAGGAGTCAAGCCAGAGCAGTGAGCTCGAGCCCGAACCGGAGGAAGGCCCCGAACGCGGAAACGCAGAGGGAAGTCGGTGTTGAATCAAGAAGGGTGTCTGCGTCTGTGTCTCCGGTTCATTCGCCCAAGGTGAGCCCCAGGAGGAATGCATATGCAGCGGGTCAGCACGTGCCAAGTGGATCACCCAGGATGAGAAAAAGTATTGATCGAAAGGAGAAGGTGTTGGGTGGGGGCAGAGGATGA 1233 0.6002 MTTGIVRDQNLEKHIHKQMGCMAGFLQIFDRQQILTGKRIYSPKRLPPASPEPEKPTASPVREVQSEDKASVPIPIPALPALEFKEGTRSSWKFSREAPRLSLDSRAVVDAKGSLHLQPREIPPENDGDKQRRSTSVIAKLMGLEPLPDSDPGPVAKLQRSASESRVSRDLPLPLPQCRFFDPNNFPSAAHGTNVVRDNNNNAAVDTRLPNGRPAADPPRQRATKSFYDSADFFPEPKHTVSVYGEIERRLRMRGINEPSKDLHTLKHILEALQLKGLLHSNNKPNQSPIVVMKPVRSVNDSPPPPSSLRSSPRRSPRVGSETRRSDRNVRSQARAVSSSPNRRKAPNAETQREVGVESRRVSASVSPVHSPKVSPRRNAYAAGQHVPSGSPRMRKSIDRKEKVLGGGRG 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2161 410 MobiDBLite consensus disorder prediction 332 346 - -
Ssu7g2161 410 PANTHER OS11G0587300 PROTEIN 1 400 - -
Ssu7g2161 410 PANTHER LONGIFOLIA PROTEIN 1 400 IPR033334 GO:0051513
Ssu7g2161 410 MobiDBLite consensus disorder prediction 317 331 - -
Ssu7g2161 410 MobiDBLite consensus disorder prediction 295 410 - -
Ssu7g2161 410 MobiDBLite consensus disorder prediction 112 169 - -
Ssu7g2161 410 MobiDBLite consensus disorder prediction 393 410 - -
Ssu7g2161 410 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2161 Ssu-Chr7 42474456 42475761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2161 92 347 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 42.803 1.28e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2161 - - gmx:100777397 579.711