Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2149 ATGTTCCCTGCAGTTATGTCCAATTCGAATTCCTTGTCTGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGGTGGACTAAATCACGATGTCACAACCATTTCTCCACAGCAGCCTCAAAAgatcaagaaaaagagaagCCTCCCTGGGAACCCAgACCCAGATGCTGAAGTGATTGCTTTATCACCGAAGACTCTTCTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTCCCGTGGAAGCTGAAGCAAAGGGACAACAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCAGAGCCTTCATGCGTTCACCACAACCCCTCAAGGGCTCTAGGGGACCTCACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGCGACAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTccagGAAGGACAGCTTCATAACTCACAGAGCATTTTGCGATGCACTGGCTGAAGAAAGTGCAAGATTGTCAGCAAACCAATTAGCCACCAACACCACCACAAACCCATCAGTCCACTCCCTCTTCCTTTTCCCAACCCAACAGCACAACAACAACTTCATCAGTCCCTGGGACCCATCCCAACAAAACCCTAACCCTAGCAACCTTACCACCTTCCACAACAACATCAAACCTGAATCTCAATACTTCCACATCCCCAACAACCTCTCTTCTCCCTCATTCCTTCATCATCACCCCAAGAGCATGATAACCTCTCCCTTCCGTGACGATCTCCACGTGCGCACACAACCCCCCTTCAACGCTGCCACGTCAGCACACCTCTCAGCCACTGCATTGCTCCAGAAGGCCGCAACCGTCGGTGCCGCCGCCATCACGGGCCCCACTCACGTGACTCAGCTCAGCATGGCCGAGTTAGGAACCGTGACTCAGCTCGACTCGGTGCCACCCGAACGCTACATGAACATGAGAGGCCTCAAGAGCAATGACGGTCTCACGAGGGACTTTCTGGGCCTCACCAACGGCGCCGCGGTTGACGTTAGCATCGACGTCAAGGATATGCTAACGTTCACCGGGGGAAGCGTAGAGTACAACCATCACCACCAACCCTACGAGCACCATCACAATAACTCGCTCTTCAAGCCACAACAAGGTTTTGGATTCCTTGGCGCAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTAA 1314 0.4985 MFPAVMSNSNSLSEEATVSCGTRIGGLNHDVTTISPQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRDNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATNTTTNPSVHSLFLFPTQQHNNNFISPWDPSQQNPNPSNLTTFHNNIKPESQYFHIPNNLSSPSFLHHHPKSMITSPFRDDLHVRTQPPFNAATSAHLSATALLQKAATVGAAAITGPTHVTQLSMAELGTVTQLDSVPPERYMNMRGLKSNDGLTRDFLGLTNGAAVDVSIDVKDMLTFTGGSVEYNHHHQPYEHHHNNSLFKPQQGFGFLGATTGPESWGNCE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2149 437 Gene3D Classic Zinc Finger 141 206 - -
Ssu7g2149 437 MobiDBLite consensus disorder prediction 28 44 - -
Ssu7g2149 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Ssu7g2149 437 SMART c2h2final6 72 94 IPR013087 -
Ssu7g2149 437 SMART c2h2final6 113 143 IPR013087 -
Ssu7g2149 437 SMART c2h2final6 148 168 IPR013087 -
Ssu7g2149 437 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Ssu7g2149 437 MobiDBLite consensus disorder prediction 28 55 - -
Ssu7g2149 437 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 413 - -
Ssu7g2149 437 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Ssu7g2149 437 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 413 - -
Ssu7g2149 437 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Ssu7g2149 437 Gene3D Classic Zinc Finger 51 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2149 Ssu-Chr7 42295172 42298679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2149 17 426 IDZ Gene Family AT4G02670 49.883 2.81e-118 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2149 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2149 K25870 - gmx:100780056 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1285 4 20969057 20972351 Ssu7g2149 7 42295172 42298679 PCT
Ssu4g0378 4 6136707 6140245 Ssu7g2149 7 42295172 42298679 PCT