Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2147 ATGAGGACTTTCTTCACTGCAGAATCATGTAAAGAAGCACACCCTAATGCTTTAAATCCTCAGTCCTGGCTCCAAGTTGAAAGAGGGAAGCTTCCCAAATTGTCATCAAAGTCCTCCTCTACATCAATAGAATCTCTAATCAAGGTCCCACAGCCACCGATACTCCCATTCTTCAAACCTGTTGAGTATGTGGAAGTTTTAGCTCAAATCCATGAAGAACTTGAGTTGTGTCCTCCGCAAGAGCAGTCAAATCTGTTTTTGTTACAATATCAGGTCTTTAGGGGCCTGGGGGATGTTAAACTGATGCGTAGAAGCCTCCAGTCAGCTTGGCAGAGAGCAAACACTGTTCATGAGAAGATTATATTTGGGGCATGGCTGAAGTATGAGAAGCAAGGGGAGGAATTAGTTGCTCAGTTGCTCACAGCTTGTGGTAAATGTGAAAAGGAATTTGGACCCATTGATGTAGAATCCCATACTCCTTTTGATAAAAAGGTAAGTTCCCAGGATAGAGTTTCCATGAATGGGAACCACACTTCACAATATGTTACCTTTACAATCGGAGATGAGAAGATAGTCTGTGATAGACAAAAGATTTCTGAACTTTCAGCACCATTTCATGCAATGCTAAAGGGGTGTTTCAGGGAATCATTTTCTGAGACTATAGATTTGTCTGAAAACAATATCTCTCCTTCAGGCATGAGGGCAATAAGCTATTTCAGCTTGACAGGAAGTTTACTTGATGTCCCTCCAAATCTTTTGGTGGAGATATTAGTTTTTGCAAACAAGTATTGTTGCGAAAGACTAAAACAGGCTTGTGATAGAAGACTTGCATCCTTTGTTTCCTCCAGACAAGATGCGCTGGAACTTATGGAATATGCTGTTGATCAGAATTCAGTTGTCCTTGCGGCTTCTTGTTTACAAGTTCTTTTACGCGATATTCCCAACTGCCTGAGTGACAATCGGGTTGTGGAGTTATTTATTCATGCTAATAGGCGGCAGTTAGCAGTCATGGTTGGGCCTGGTATATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCCGACACAGCAGCTCATTTCCTGGAACGGTTAGTTGATTTTGCTGAAAATGACAAGCAGAGACTGCTGGCATTTCATCAACTGGGATCTGTAAGACTCTCAAGGAAAGAATATGATGAAGCCTATGGTCTTTTTGAGAGGGCTGTAAATGCAGGTCATATTTATTCTGTTGCAGGCTTGGCTAGACTGGACTCTATAAAGGGTGAGAAGCTTTTATCTGTTGAGAAGATCAGCTCAGTCATTTCTTCTGTTACTCCACTTGGATGGATGTACCAGGAAAGATCACTATACTATGACGGTGATTTGAGGTGGAAAGACCTTGAGAAAGCAACTGAACTGGACCCTACTCTTGTATATCCCTATATGTGTAGGGCTGCATCTTTAATGAGGACAGAGAATGTTCAAGGTGCACTGGCTGAAATCAACCGGATTCTTGGCTTCAAACTTTCATTAGAGTGCTTGGAACTACGGTTTTTTATCTATCTGGCCCTTGAGGACTACAAAGCAGCCCTCCGAGATGTTCAAGCAATTCTTACCCTATGTCCACATTATAGAATGTTTGAAGGGCGTGTAGCTGCATCTCAGCTCTGTACTCTTGTGCGCGAGCATGTTGAACATTGGACAACAGCAGATTGTTGGGCGCGATTGTATGACTGTTGGTCTGCTGTTGATGATATTGAGTCTCTATCTGTTATCTACCAGATGCTTGAATCTGATGCGGCAAAAGGTGTTCTATACTTCAGACAGTCACTGCTTCTCCTCAGGCTAAACTGTCCTGAGGCAGCCATGCGGAGTCTACAGTTAGCTTGGCAACATGCATCAAGTGAGAATGAAAGACTTGTATATGAGGGGTGGATCTTGTATGATACAGGTCATTGTGAGGAAGGGCTCCAAAAAGCTGAAGAGTCTATTAGTATTAAAAGGTCTTTTGAGGCCTACTTCCTGAAGGCCTATGCATTGGCCGACTCTAGTGTAGATTCATCATGTTCTTCAACTGTTATTTCACTTCTGGAAGATGCCTTGAGGTGTCCTTCTGATAATCTGCGCAAAGGTCAGGCCCTAAACAATCTTGGAAGTGTTTATGTTGATTTTGGGAAATTGGACTTAGCGGAAGATTGCTATATCAAGGCCCTAAAAATCCAGCACACCCGAGCCCATCAGGGTCTTGCTCGTGTTCATTTTCTGAAAAATGATAAGGCTGCTGCTTACAAGGAAATGACCAATCTTATTGAGAAGGCAAGAAACAATGCATCAGCGTATGAGAAGAGGTCTGAGTATGGTGATCGTGAACTCACAAAGGCAGATCTGGAGATGGTGACTAGATTAGATCCACTTCGGGTGTATCCTTATAGATATCGAGCAGCAGTTTTGATGGACAACCATAAGGAAGAGGAAGCCATTGCCGAACTCTCTAGAGCAATTGCATTTAAAGCTGATTTGCACCTCTTGCATCTACGTGCAGCATTCCATGAACACAAGGGAGATGTCTTAGGTGCGCTAAGAGACTGTCGTGCTGCACTCTCAGTGGACCCAAACCATCAAAAAATGTTGGAACTTCAGTGTCGTGTTAATAGCCACGAGCCATGA 2664 0.4276 MRTFFTAESCKEAHPNALNPQSWLQVERGKLPKLSSKSSSTSIESLIKVPQPPILPFFKPVEYVEVLAQIHEELELCPPQEQSNLFLLQYQVFRGLGDVKLMRRSLQSAWQRANTVHEKIIFGAWLKYEKQGEELVAQLLTACGKCEKEFGPIDVESHTPFDKKVSSQDRVSMNGNHTSQYVTFTIGDEKIVCDRQKISELSAPFHAMLKGCFRESFSETIDLSENNISPSGMRAISYFSLTGSLLDVPPNLLVEILVFANKYCCERLKQACDRRLASFVSSRQDALELMEYAVDQNSVVLAASCLQVLLRDIPNCLSDNRVVELFIHANRRQLAVMVGPGIFALFCFLSEVSMNLNSSSDTAAHFLERLVDFAENDKQRLLAFHQLGSVRLSRKEYDEAYGLFERAVNAGHIYSVAGLARLDSIKGEKLLSVEKISSVISSVTPLGWMYQERSLYYDGDLRWKDLEKATELDPTLVYPYMCRAASLMRTENVQGALAEINRILGFKLSLECLELRFFIYLALEDYKAALRDVQAILTLCPHYRMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIESLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLAWQHASSENERLVYEGWILYDTGHCEEGLQKAEESISIKRSFEAYFLKAYALADSSVDSSCSSTVISLLEDALRCPSDNLRKGQALNNLGSVYVDFGKLDLAEDCYIKALKIQHTRAHQGLARVHFLKNDKAAAYKEMTNLIEKARNNASAYEKRSEYGDRELTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQKMLELQCRVNSHEP 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2147 887 Gene3D Tetratricopeptide repeat domain 774 886 IPR011990 GO:0005515
Ssu7g2147 887 PANTHER ETO1-RELATED 1 887 IPR044631 GO:0010105
Ssu7g2147 887 Pfam Tetratricopeptide repeat 711 739 IPR019734 GO:0005515
Ssu7g2147 887 SUPERFAMILY POZ domain 182 276 IPR011333 -
Ssu7g2147 887 SMART tpr_5 710 743 IPR019734 GO:0005515
Ssu7g2147 887 SMART tpr_5 381 414 IPR019734 GO:0005515
Ssu7g2147 887 SMART tpr_5 839 872 IPR019734 GO:0005515
Ssu7g2147 887 SMART tpr_5 510 543 IPR019734 GO:0005515
Ssu7g2147 887 Coils Coil 755 782 - -
Ssu7g2147 887 SUPERFAMILY TPR-like 383 739 IPR011990 GO:0005515
Ssu7g2147 887 SMART BTB_4 180 280 IPR000210 GO:0005515
Ssu7g2147 887 Gene3D Potassium Channel Kv1.1; Chain A 175 319 IPR011333 -
Ssu7g2147 887 PANTHER ETO1-LIKE PROTEIN 1 1 887 - -
Ssu7g2147 887 SUPERFAMILY TPR-like 375 504 IPR011990 GO:0005515
Ssu7g2147 887 ProSiteProfiles TPR repeat profile. 710 743 IPR019734 GO:0005515
Ssu7g2147 887 Gene3D Tetratricopeptide repeat domain 355 547 IPR011990 GO:0005515
Ssu7g2147 887 Gene3D Tetratricopeptide repeat domain 599 772 IPR011990 GO:0005515
Ssu7g2147 887 SUPERFAMILY TPR-like 694 882 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2147 Ssu-Chr7 42230654 42234357 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2147 - - gmx:100785039 1604.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1287 4 21017992 21025746 Ssu7g2147 7 42230654 42234357 PCT