Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2141 ATGGAGGAGTATGAAATTCTAGAACAGATTGGAAAAGGCTCTTTTGCTTCTGCTCTGCTTGTCAGGCACAGGCACGAAAACAAAAAGGTTGTTTTGTATGTGTCGTCAATCGTCATTGGCTATTGTGAAGGAGGAGATGTGATGGAAGCTATTAAAAAGGCCAATGGCGTTCATTTTCCTAAAGAGTGCCTGGTTCAACTGCTGATGGCACTTGATTACTTGCGTGCTAATCATATTCTTCGTCGTGATGTCAAGTTTTCAAATATATTCTTGACAAAAAATCAAGATATACGTCTAGGTAATGGCTTTCTTTATTCTGTCCTCAAACGGCACTCACGCTTAATGAATGTTGTGGGGACTCCGAGTTATATGCGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGTAAGATAGATTTATTTTCtttgattaacaaaataaacaagtcTTTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGAGGGCTTGTTGAGGGTATGCTGCGGAAAAATCCAGTGCATAGGCCAAGTGCTGCAGAGTTATTAAATCATCCTCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGGAGAATTACTTATCCATTCAATGGTCTGACTCAAACTATGTTAGGAGGACTCAGTTTGTTGAGCCAGAATCTGTTTCTACTCTTTCTCACCGAGATAAGTGATTGTCATTCAGCAATGACAGGGCCTTGA 768 0.3919 MEEYEILEQIGKGSFASALLVRHRHENKKVVLYVSSIVIGYCEGGDVMEAIKKANGVHFPKECLVQLLMALDYLRANHILRRDVKFSNIFLTKNQDIRLGNGFLYSVLKRHSRLMNVVGTPSYMRPELLADIPYGSKSDIWSLGKIDLFSLINKINKSLVAPLPTVYSGSFRGLVEGMLRKNPVHRPSAAELLNHPHLQPYILKIHLKLNNPRRITYPFNGLTQTMLGGLSLLSQNLFLLFLTEISDCHSAMTGP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2141 255 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 36 214 - -
Ssu7g2141 255 Gene3D Transferase(Phosphotransferase) domain 1 57 209 - -
Ssu7g2141 255 SUPERFAMILY Protein kinase-like (PK-like) 2 221 IPR011009 -
Ssu7g2141 255 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 32 - -
Ssu7g2141 255 Gene3D Phosphorylase Kinase; domain 1 1 56 - -
Ssu7g2141 255 ProSiteProfiles Protein kinase domain profile. 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2141 255 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK4 36 214 - -
Ssu7g2141 255 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK4 1 32 - -
Ssu7g2141 255 SMART serkin_6 4 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2141 255 Pfam Protein kinase domain 36 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2141 Ssu-Chr7 42190599 42196752 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2141 37 195 MAP Kinase Kinase Kinase Kinase AT1G53165 30.899 8.46e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Ssu7g2141 Pkinase 7.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2141 K08857 - gmx:100787166 315.849