Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2138 ATGGAGCAATATGAAATTCTAGAGCAGATTGGAAGAGGCTCCTTTGCTTCTGCTCTGCTTGTCAGGCACAGGCACGAAAACAAAAAGTATGTCCTTAAGAAGATCCGCCTTGCTCGCCAGACTGACAGAACCCGTAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATCGTAGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGACGGAAGCTATTAAAAAGGCCAATGGCGTTCATTTTCCTGAAGAGAGGCTTTGCAAGTGGCTGGTTCAACTGCTGATGGCGCTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGATGATCTTGCATCCTCAGTTGTGGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCACtgattaacaaaataaacaagtcTTTAGTGGCTCCACTACCAACAGTATATTCTGGTTCTTTTCGAGGGCTTGTTAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGAAGAAGTACTTATCCATTCCAATGGTCTGATTCAAACTATGTAAGGAGGACTCAGTTTGTCCAGCCAGAATCTGTTTCTACTCTTTCTGACAGAGATAAACGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTCTGTGTTCTACTCAAAGAGCCCTGGGATTCTTTACTTGTTCAAAAGAGAAACACTATGAACTATCTGTTGGCTGTGTCCGTGAAGAATGCAATTCTAACAAGTCAAGAGACACAAAGTTCTCAACTGTTGATAGGATGCCAAGATTGAGAACAGCAGCTAAGGAATATGCCACCCCCCGACAGCAGACAATACCATCAAAGATGTCCCATACTGGTTCCAAGCGTGAGTTACTTCCAGCATCTCCCACTCCAGATGGTAAATTTCCACCACCAACTCGCAGAGCTTCCCTTCCACTGCCTACCAGATCCATGGGCACGAGCACACCTTATAGAGCTAATATTAGTCTTCTTCGAGGTGTGGATTCTCCTGATATTTCTGTTAATGCACCACGAATTGACAAGATTGCCGAATTCAATCTGGCCTCTTGTGAGGATCCTCTCTTCCCTGTCCATGGAACTTCATCAACTTTGGCTCAGTGCTCTTCTGGTTCCCCAAAGAGTGCTGACCGCTTGATCACGAAGGACAAGTGTACAATCCAAGTTGTGGACAAAGCCGGCGTCCCTTCCAGTGGCAGTGATGTTTGTCCTGCTGCTCCAGTTTCACATGGCAATGAATGCTCTGAACATGCTGTTTCAAGCCACTCCGCTGCCGAGTCTCACCAGCGCAGGTTTGACACCTCGTCTTATCAGCAACGTGCGGAGGCATTGGAGGGTTTGCTTGAGTTCTCTGCCCGGCTCCTACAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTTGGTCCTGAGAAGGTTTCCCCAAGGGAAACAGCTATTTGGTTGGCTAAGAGCTTCAAGGAAACTACGGTCTAA 1839 0.4421 MEQYEILEQIGRGSFASALLVRHRHENKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTQFVQPESVSTLSDRDKRLSFSNDRALNPSISGTELGSLCSTQRALGFFTCSKEKHYELSVGCVREECNSNKSRDTKFSTVDRMPRLRTAAKEYATPRQQTIPSKMSHTGSKRELLPASPTPDGKFPPPTRRASLPLPTRSMGTSTPYRANISLLRGVDSPDISVNAPRIDKIAEFNLASCEDPLFPVHGTSSTLAQCSSGSPKSADRLITKDKCTIQVVDKAGVPSSGSDVCPAAPVSHGNECSEHAVSSHSAAESHQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETTV 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2138 612 SUPERFAMILY Protein kinase-like (PK-like) 1 313 IPR011009 -
Ssu7g2138 612 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2138 612 MobiDBLite consensus disorder prediction 383 433 - -
Ssu7g2138 612 CDD STKc_Nek 3 258 - -
Ssu7g2138 612 PANTHER SERINE/THREONINE-KINASE NEK4 1 601 - -
Ssu7g2138 612 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Ssu7g2138 612 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Ssu7g2138 612 MobiDBLite consensus disorder prediction 383 397 - -
Ssu7g2138 612 Gene3D Transferase(Phosphotransferase) domain 1 86 311 - -
Ssu7g2138 612 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2138 612 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2138 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Ssu7g2138 612 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2138 Ssu-Chr7 42167444 42173744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2138 10 289 MAP Kinase Kinase Kinase AT1G53570 29.000 3.49e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Ssu7g2138 Pkinase 2.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2138 K08857 - gmx:100810347 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1290 4 21101758 21108199 Ssu7g2138 7 42167444 42173744 PCT