Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2118 ATGAGAGAGGGGCTGAGATCTCGGACTCGATTGGGGACGGTTTCTGGTGAAAGAGGAGTTGTTCGCAAGGAGAAGATTGGTGTGAAGAATGAGGCTGTTGATTTGGGTGATGAGGTTTTAGAGGCACAGGACTCAACGATTGAGAAGAAGGGTGAAGTTGAACGTGACGTGAAAGGAGAATGTGGTTTCGATTTGAATGTGAGTCCTAGTGGAAATGTTGACTTAGCTGAGAATGGGAGTGGAGGGAGTTGTTTTAGTGGTGGGGGTAGTATTGTAGTAGCTGAAGTAGATAGGAAGGCGAAGAAGGAACAAGGTTCAAAGGATGAAGTGTTGGTTGGTGGTCGAGTGTTGCGCTCAAGGTCAAAGAGGGGGGATGATAGAAGAACGTATGATGGAGAAAATGAGGGTGTCTTTGCTGGGAATAATGGAGAACATAGTGGGTGTGAGAGGGTGAAAGTTAAGAAGGAATGTGAAGAAGCTGATGAATTTTTGGCtgacagttgtgagaatgaaatGGTTAAGGTGCAGAAGGCGGGGAATGGCAGGAGGAAATTGAAACGGAAGCGTGGGAGGCCTCCCAAAATAGAGTTGACGGAGCAAGATCAATCAGTTGATCGGTTGCCACGTAAGCGTGGGAGACCTCCCATGTCCGGCCGACAAAACCATCTCGTGACAGTGGTGGCGcatgatagaaaaagaaaggcaGGGGATCGAAAAGGTAAAGAAGGTTCAACTATGAGAGGTGGTGCTAATGTGAGTGCAATTGATGATACAAATTCAAGGAAGTCTGCTGGGAATGAGTTAGAAAAGAAGGAATTTTCTCCTGTCAAGAAGGATAAATTTAGTAAGGTTTTGGAAACTGACAACAATGAAGTTGTCACTGAGAAAAGTGGAAAGAATAAAGTAAAGCAGTTAGTGAGGGATCAAATAAAGGAATGGCTCTCAGCTGCAGGCTGGACAGTTGACTATAGACCCAGGAGTGGCAGAGAGTACAAGGATGCAGTGTATGTTAGTCTGGATGGACATACACATTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAAAGTGTTATGAAGCTGGTAATGGTGAAGGTAAGGTATATGGGCCAGGCTTCAAATTTACACCAATACCAGAAGAGGATTTCAAAATACTTACTAAGGTAATTAACAAGCAAAGAAACAGGAAAGATAAGTTGGTACAGAAAGGGGGAACGGGTGGAAAGAAAGTTGACGGAGTCATTggtaaaaagaacaaagaaaagtCAGGTTCTGATGCAGGCATGGGTAAGTCAATGAAgaggaaaatgaaaaggaaatggTCACTTGGCAACACTGACGTTACATCACCCAACAGGATGCCAGTTCTTGTGAGGGATCGTAAGCGACACAAAACACAAAACAATAAGCGATGTGCTCTGTTGGTTCGCAATGCTGAGGAGATAGATGCAGAAACTGATGGATATGTACTGTACAGCGGAAAACGAACTTTGCTTGCCTGGATGATTGATTTGGGCACAGTCCTTCAAAATGGGAAGGTTCATTATATGCCGCACAAAAGTAAAAGTGCAGCACTGGATGATTCATGGAATAAACAAGATGAATCTGAACGTAAAGGTTCTCATTTTGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTAATATGTTGTGATGGTTGCCCATCAACATTTCATCAAGGCTGCTTGGATATAAAAAAGTTTCCATCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAGTAAAAGTTCAAACCAAGGGGATGGCAATGATCAACTTACTGTATCAAAATTACTCACATGCCAATTATGTGAGGAAAAATaTCACAGATCCTGTGTTGAGGCAAATGATGCAAATACTGATGATTCCAGGGATCCCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGAGACTTGAAATGCTCCTAGGGGTTAAACATGAAATTGAAGATGGTTATTCTTGGACTTTTATTCGACGGTCAGATGTTGGCTTTGATGCTTCTCAGATAAAACCTCAGATGGTTGAATGTAATTCTAAGCTGGCTGTTGCAGTATCAATAATGGATGAGTGCTTCATGCCATATATTGATCATAAAAGTGGGATCAATCTGATCCACAGTATTCTGTATAATTGTCGGTCAAATTTCAATCGTCTGAACTATAGTGGATTTGTTACTGCAATTCTAGAAAGAGGTGATGAGATCATCGCTGCTGCATGTATCAGGATCCACGGGAACCAACTAGCAGAGATGCCATTTATTGGGACCCGCTATATGTACAGGCGACAAGGAATGTGCCGCCGGCTTCTAAATGCCATTGAACGGGCACTCAGCTCTTTAAATGTTGACTTACTGGTCATACCAGCCATCTCAGAACTCCGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGCCACTTGGATTAACAAGCAAgcaagtaataaataatatgaatctGTTGGTATTCCCTCATGTAGATATGTTACAGAAGAAGATATCAAAACATAAATTGGCTGGTCAAAATCTGATTCCTACAGGAGTTTCCAATCTTAAAAGGAATCAAATAGCAAATAATTCGGATGGAGTGGTCTCATCTGGATCTGATTTGATTAATTATACTGAGATTCCTCCCTCTAATGCATGCCAGATAAATGATGAAACCATATCTATTGAATCTGGTTGTCATCTTCCTGAGGGTTCATTGAATAATGTACCTGACATTGCTAGCAACACTATAGATCATAGGAAATCTTCAAAAGATGACACATGTCAAGTTGTATGTCAAGTGGTTCATGAAAATTTGGTGAGTGAAGACAACAGTATTGAAAATGCCCGTGATTATGTGACTGATACTTGTTGCCGAGTTGAAGATAACCAGTTGAACAATTGCTGCATTCCTTATGAGGAGAGGCAGTGTCTCACGTCTTGTGTTAGCACTGAGGCTACAGGATATTGTGTTGGTGTTTCACTGGAGGTTACTGAAAACTTTCCCAATCAGGTCAAAGTAGCGAATGAggttatttcaaataaaaacagTGCTGATAACTCTGCACCCTGTGGTGCAGAAAGTATTCCTCTTGACTCACAAATTGCATTTGGTACAAGGGATTCAACAGATTCTGCTGACTGTATTCACCAGGATTCATATAAGATTTCTGACAGTTGTGGACTGAGAAGCAAGACTGATTGTGGTCAACCGaattttataggaacaaaagaAGTACACGCTGAATCTGGTAGTGTTTGTGGTTTTCACTCTAGACCCAAGGGTGATTGTGCTTCTGGTGAAGCTGCTCCCACAACCAACGTCTTGATGCACCTTAGATCACAGAACATAGCCAATAATAAGCCTTGGATCAAAGGGTCTTCAGAGCTAGCTGAGCCTGATTTGCAGGTTGGTCAAACCGCACAGAACAGTGCTCCCTCCTTGTGGAGCTCAAACACTGCTTCTGGTGCAGCTCTTCACTGGGCATCTGGTGGCAGTGCTTCACGTGGTAGTACTGAGGGGATAGTTTTGTCAAACCAAGCCAGTTGA 3600 0.4111 MREGLRSRTRLGTVSGERGVVRKEKIGVKNEAVDLGDEVLEAQDSTIEKKGEVERDVKGECGFDLNVSPSGNVDLAENGSGGSCFSGGGSIVVAEVDRKAKKEQGSKDEVLVGGRVLRSRSKRGDDRRTYDGENEGVFAGNNGEHSGCERVKVKKECEEADEFLADSCENEMVKVQKAGNGRRKLKRKRGRPPKIELTEQDQSVDRLPRKRGRPPMSGRQNHLVTVVAHDRKRKAGDRKGKEGSTMRGGANVSAIDDTNSRKSAGNELEKKEFSPVKKDKFSKVLETDNNEVVTEKSGKNKVKQLVRDQIKEWLSAAGWTVDYRPRSGREYKDAVYVSLDGHTHWSITLAYKRLKKCYEAGNGEGKVYGPGFKFTPIPEEDFKILTKVINKQRNRKDKLVQKGGTGGKKVDGVIGKKNKEKSGSDAGMGKSMKRKMKRKWSLGNTDVTSPNRMPVLVRDRKRHKTQNNKRCALLVRNAEEIDAETDGYVLYSGKRTLLAWMIDLGTVLQNGKVHYMPHKSKSAALDDSWNKQDESERKGSHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQGCLDIKKFPSGDWHCIYCCCKFCGSVSKSSNQGDGNDQLTVSKLLTCQLCEEKYHRSCVEANDANTDDSRDPFCGNRCQELSERLEMLLGVKHEIEDGYSWTFIRRSDVGFDASQIKPQMVECNSKLAVAVSIMDECFMPYIDHKSGINLIHSILYNCRSNFNRLNYSGFVTAILERGDEIIAAACIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIERALSSLNVDLLVIPAISELRETWTSVFGFEPLGLTSKQVINNMNLLVFPHVDMLQKKISKHKLAGQNLIPTGVSNLKRNQIANNSDGVVSSGSDLINYTEIPPSNACQINDETISIESGCHLPEGSLNNVPDIASNTIDHRKSSKDDTCQVVCQVVHENLVSEDNSIENARDYVTDTCCRVEDNQLNNCCIPYEERQCLTSCVSTEATGYCVGVSLEVTENFPNQVKVANEVISNKNSADNSAPCGAESIPLDSQIAFGTRDSTDSADCIHQDSYKISDSCGLRSKTDCGQPNFIGTKEVHAESGSVCGFHSRPKGDCASGEAAPTTNVLMHLRSQNIANNKPWIKGSSELAEPDLQVGQTAQNSAPSLWSSNTASGAALHWASGGSASRGSTEGIVLSNQAS 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2118 1199 MobiDBLite consensus disorder prediction 1178 1199 - -
Ssu7g2118 1199 MobiDBLite consensus disorder prediction 118 145 - -
Ssu7g2118 1199 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 742 836 IPR016181 -
Ssu7g2118 1199 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 694 854 IPR000182 GO:0016407
Ssu7g2118 1199 SUPERFAMILY FYVE/PHD zinc finger 543 596 IPR011011 -
Ssu7g2118 1199 MobiDBLite consensus disorder prediction 118 133 - -
Ssu7g2118 1199 MobiDBLite consensus disorder prediction 192 212 - -
Ssu7g2118 1199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 544 616 IPR013083 -
Ssu7g2118 1199 ProSiteProfiles Zinc finger PHD-type profile. 552 597 IPR019787 -
Ssu7g2118 1199 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 525 1147 - -
Ssu7g2118 1199 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 217 524 - -
Ssu7g2118 1199 CDD NAT_SF 750 809 - -
Ssu7g2118 1199 PANTHER PHD FINGER PROTEIN 12 217 524 IPR042163 GO:0003714|GO:0045892
Ssu7g2118 1199 SMART PHD_3 554 595 IPR001965 -
Ssu7g2118 1199 SMART PHD_3 596 655 IPR001965 -
Ssu7g2118 1199 MobiDBLite consensus disorder prediction 399 451 - -
Ssu7g2118 1199 CDD PHD1_AIRE 555 594 - -
Ssu7g2118 1199 MobiDBLite consensus disorder prediction 175 271 - -
Ssu7g2118 1199 MobiDBLite consensus disorder prediction 225 244 - -
Ssu7g2118 1199 MobiDBLite consensus disorder prediction 412 431 - -
Ssu7g2118 1199 PANTHER PHD FINGER PROTEIN 12 525 1147 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2118 Ssu-Chr7 41815661 41823636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2118 182 860 PHD Transcription Factor Family AT5G36670 38.757 2.03e-159 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2118 - - gmx:100784172 1717.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1305 4 21342706 21349866 Ssu7g2118 7 41815661 41823636 PCT