Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2098 ATGCAAAACAGGAAAAAGagcaaaatattatattattttaatttatataatatgatggTTAATTTGTTACTTTGTCATTTGTGGCATACGCAGACCGTGGTGTGCATTCCTTTATTGGACGGCGTCGTTGAGTTGGGCACAACGGATAAGGTTCAAGAGGACCTTAACTTGATCCAACGCGTGAAGAGCTTCTTCGTCGACCACAACAGCCCTCTGCCGCCGAAGCCCGCCCTGTCGGAGCATTCAACCTCCAaccccacctcctcctccgaCCACGTCCCCGCCGTCATGTACACCGTGGCAGACCCGCCCGCCGCCAATCCCAGCCAAAACGACGACATGGACGAAGACGAAGAGGAAGAGGACGACgacgaggaggaggaggaggaggaggaagcgGAGGAGTCCGGCTCCGAAGACGAAACCGGAGGCCGCGTCGCCCGCCGGACCCCGACGCCGGACGCGGCGGGCCCCGCGGCCGCGGAGCCGAGCGAGCTGATGCAGCTGGAGATGTCGGAGGACATCCGGGTCGGGTCGCCGAACGACGGGTCGAACAACCTGGACTCGGACTTTCACTTGCTGGCGGTGAGTCAGGGAGGGAACAACGCCACGGGGCAGGCCGAGTCGACTCGGAGGTGGGCCCCGAGTCAAGACCCACTACAAGTTCAACTACCGGCTTCAGCCCTTCATCCATTAGAAGACATGACCCAAGAGGACACTCATTACTCTGAAACGGTATCCAACATCCTCCAAAACCAGTCCAGCCGGTGGCCCCGACCACCCCCCTCCGTTGGCTACATCACATACTCCACGCATTCAGCTTTCTCAAAGTGGAGCAGCCGCGCCAGCCATCACTTCCACCAGCCGGTGGACGGTACCAACCAGTGGCTCCTCAAGTACATCCTCTTCACAGTCCCATACCTCCACGCCAAGAACCCCGGCGAGAGTTCCCCACAAACCGCCGCGGACCCAAAGCTGCGCAGCAAGGGAACGCCGCAGGACGAGCTCAGCGCCAACCACGTGCTGGCGGAGCGCCGCCGCCGCGAGAAACTAAACGAAAGGTTCCTAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCCATATTGGGCGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAAGAACTAGAGGCACGTAGCCGCCAGACGGAGGCAGAACATCGTTCAAGGCTCGCCGagATAACGGCTCAGAGGACGAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTAACGGTGATGGATAAGAGGAAGGTGAGGATCGTGGAAGGGGCGGTGGCGAAGACGAAGGCCGTGGAGGTTGCGGCCGCCACGTCGGTGCAAGTTTCGATCATCGAGAGCGACGCGCTGTTGGAGCTTGAGTGCCCCCACAGAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATTGGGGTGCAGTCGTCGCTTAACAATGGGATGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAAAATGGGAACGGGAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTAAACCAAATCATACCCCACACTGTTGACTAG 1620 0.5568 MQNRKKSKILYYFNLYNMMVNLLLCHLWHTQTVVCIPLLDGVVELGTTDKVQEDLNLIQRVKSFFVDHNSPLPPKPALSEHSTSNPTSSSDHVPAVMYTVADPPAANPSQNDDMDEDEEEEDDDEEEEEEEEAEESGSEDETGGRVARRTPTPDAAGPAAAEPSELMQLEMSEDIRVGSPNDGSNNLDSDFHLLAVSQGGNNATGQAESTRRWAPSQDPLQVQLPASALHPLEDMTQEDTHYSETVSNILQNQSSRWPRPPPSVGYITYSTHSAFSKWSSRASHHFHQPVDGTNQWLLKYILFTVPYLHAKNPGESSPQTAADPKLRSKGTPQDELSANHVLAERRRREKLNERFLILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARSRQTEAEHRSRLAEITAQRTSSSSSKEQQRSGVTVMDKRKVRIVEGAVAKTKAVEVAAATSVQVSIIESDALLELECPHREGLLLDVMQMLREVRIEVIGVQSSLNNGMFVAELRAKVKENGNGKKVSIVEVKRALNQIIPHTVD 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2098 539 PANTHER TRANSCRIPTION FACTOR TT8 29 536 - -
Ssu7g2098 539 MobiDBLite consensus disorder prediction 394 428 - -
Ssu7g2098 539 Gene3D - 330 401 IPR036638 GO:0046983
Ssu7g2098 539 MobiDBLite consensus disorder prediction 312 339 - -
Ssu7g2098 539 MobiDBLite consensus disorder prediction 409 425 - -
Ssu7g2098 539 Pfam Helix-loop-helix DNA-binding domain 338 385 IPR011598 GO:0046983
Ssu7g2098 539 MobiDBLite consensus disorder prediction 394 408 - -
Ssu7g2098 539 Coils Coil 111 136 - -
Ssu7g2098 539 PANTHER TRANSCRIPTION FACTOR TT8 29 536 - -
Ssu7g2098 539 SMART finulus 341 390 IPR011598 GO:0046983
Ssu7g2098 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 404 IPR036638 GO:0046983
Ssu7g2098 539 MobiDBLite consensus disorder prediction 72 163 - -
Ssu7g2098 539 MobiDBLite consensus disorder prediction 111 138 - -
Ssu7g2098 539 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 65 IPR025610 -
Ssu7g2098 539 MobiDBLite consensus disorder prediction 76 94 - -
Ssu7g2098 539 Coils Coil 374 408 - -
Ssu7g2098 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2098 Ssu-Chr7 41453147 41458464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2098 31 83 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 69.811 4.08e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g2098 HLH 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2098 - - gmx:100786815 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2098 7 41453147 41458464 Ssu7g2098 7 41453147 41458464 ECH