Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2087 ATGGAAGAGCTAAGTAACCAAGAGAACCCTGTGCAACTAATGTCCTGTGACACTGGGGGAACCGGCAATGATGTCTCTCATTCTGCGGAGGGTCATCTAATTCCCAACCCAAAATTTGTCATTGCAGCATCATCTGGAAGAAATGGGAGCCAGTGGACTTGCCTCCCAAAACCATCTCATCATAGCTATGTTGAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCAACTGAATACATGATGGGGAGCAGTTATCTACCCTTTGGCAACATCAATGATGGTAATGGGGTCAATGGAACAGATAGAAGCTTCTTTTACAATGATCCTGGAAAAGTCTGTGCCTTTAAGCCTATTGGTCCTTCAAGTAATGACCTTGACATTAGGAAGATGGGGTTTTGGAGAGCGGATGAAGGAGAGGATGCAATTAAAGTTGAAACTGAAAGTGGTCAAAATTTTCTATATGCTGAGAGTCATGCTTCCTATTCCGTTGGAGATAAGCATAATGCTTCACGACTTGATCCAATGGTAATGGTTGGTGCACCTGCTTTACTTCCCAAACCAGGATGCAGCTCCTCAAAACAGAAAGCACGTGCCACTGACCGTCAACGCAGGCAACGTATGGCTGACAACCTCAAAGCCTTACACGAATTGCTTCCAAATCCAGCAGAGggAAGTCAAGCGTACATACTGGACGATATAATTGACTATATCAAATATTTGCAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGCGGCAGCAAGTCAATCAACTGCTATACCACTGGTTTTTCATGAGGGTTACGGCCATTATATCAACCAACAGATGCTCAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCAGCAGCAGCTGTTCAGCTACTAGAGAGTAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGACTTGAGTGAAGCTATGCAAATGTTTGGCGGGAGTGCACTTGTCTAA 1002 0.4361 MEELSNQENPVQLMSCDTGGTGNDVSHSAEGHLIPNPKFVIAASSGRNGSQWTCLPKPSHHSYVEYLSESSTYLPNTSTEYMMGSSYLPFGNINDGNGVNGTDRSFFYNDPGKVCAFKPIGPSSNDLDIRKMGFWRADEGEDAIKVETESGQNFLYAESHASYSVGDKHNASRLDPMVMVGAPALLPKPGCSSSKQKARATDRQRRQRMADNLKALHELLPNPAEGSQAYILDDIIDYIKYLQLQIKEQSGSRLQAAASQSTAIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAAAVQLLESKGLFLLPMALVDDLSEAMQMFGGSALV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2087 333 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 15 317 - -
Ssu7g2087 333 SMART finulus 199 248 IPR011598 GO:0046983
Ssu7g2087 333 Pfam Helix-loop-helix DNA-binding domain 195 243 IPR011598 GO:0046983
Ssu7g2087 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Ssu7g2087 333 CDD bHLH_AtbHLH_like 201 248 IPR045239 -
Ssu7g2087 333 Gene3D - 192 264 IPR036638 GO:0046983
Ssu7g2087 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 261 IPR036638 GO:0046983
Ssu7g2087 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2087 Ssu-Chr7 41253998 41255976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2087 196 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 40.441 5.71e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g2087 HLH 5.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2087 - - gmx:100788949 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2087 7 41253998 41255976 Ssu7g2087 7 41253998 41255976 ECH