Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2086 ATGACCATCTCACTGTTAATGTGCAGAATAAAACAACCCCTAATAAACGTTCCTTGCAGTGGCCAAAAATTGAATGTGAGGCAAATTGAGAAAGAGAAGGTAGTGCTTGTAATGGGAGCCACAGGCACAGGGAAGTCAAGGCTGTCCATTGACCTTGCCACGTGTTTCCCATCGGAAATCGTAAACTCCGACAAAATCCAAGTCTACCAAGGGCTCGACCTAGTGACGAACAAAATCTCCAAGGAAGACCAACGTGGCGTGCCGCACCACTTACTAGGAACACAAAATCCGCACACGGAGTTCACAGCCAATGATTTCTGCGACATGTCATCAGCGGCCATTGACTCGATCAGGAGCCGCGAGCAGCTTCCAATCATCGCTGGAGGCTCCAACTCGTGTCTCGAGGCCTTGATCGACGACGATGATTACAAGTTTCGGTCGCGCTACGAGTTTTGCTGCCTCTGGGTTGACGTGGCAACGCCCGTGCTTCACTCCTACGTGACAAAGCGTGTTGACCAAATGTTTTGCAACGGAATGGTCGATGAGCTGAGACCGTTTTTCAGTCCCAACGGGGACTACTCGAGAGGGGTTAGAAGGGCCATTGGGGTTCCCGAATTTGATGAGTATTTTCGGAGGGAGGAGTTTGTTGACGAGGAGACAAAGCAGAGGTTGTTGGAACAAGCGATCAAGAAAATGAAGTTGAACACGTGCAAGCTGGCGATGAAGCAGTTGGACAAGATTCATAGGCTGAGGAATGTTAAGAGATGGGAGATTCATCGCTTGGATGCCACGCCTGTGTTTCGGAAGCGTGGAGAAGAAGCGAACGAGGCTTGGAAGAAGCTGGTGGCAGAGCCTAGTGCTATGATCGTTGCTCGCTTTCTATATAACTCCACCAATAATGCCAACGTTGTTTCTGGTGGCCTTAGAATGCTGCCAGCTTCAGAGAGTGTTATGGCTGCGGCAACGTGCTAg 972 0.499 MTISLLMCRIKQPLINVPCSGQKLNVRQIEKEKVVLVMGATGTGKSRLSIDLATCFPSEIVNSDKIQVYQGLDLVTNKISKEDQRGVPHHLLGTQNPHTEFTANDFCDMSSAAIDSIRSREQLPIIAGGSNSCLEALIDDDDYKFRSRYEFCCLWVDVATPVLHSYVTKRVDQMFCNGMVDELRPFFSPNGDYSRGVRRAIGVPEFDEYFRREEFVDEETKQRLLEQAIKKMKLNTCKLAMKQLDKIHRLRNVKRWEIHRLDATPVFRKRGEEANEAWKKLVAEPSAMIVARFLYNSTNNANVVSGGLRMLPASESVMAAATC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2086 323 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 25 300 IPR039657 -
Ssu7g2086 323 Pfam IPP transferase 67 140 - -
Ssu7g2086 323 Pfam IPP transferase 145 244 - -
Ssu7g2086 323 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
Ssu7g2086 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 142 IPR027417 -
Ssu7g2086 323 Gene3D - 31 294 IPR027417 -
Ssu7g2086 323 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 25 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2086 Ssu-Chr7 41241593 41242564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2086 147 307 C2H2 Transcription Factor Family AT2G27760 30.319 1.07e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2086 K10760 - gmx:100803964 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2086 7 41241593 41242564 Ssu7g2086 7 41241593 41242564 ECH